View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15737_low_1 (Length: 439)
Name: NF15737_low_1
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15737_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 23 - 421
Target Start/End: Complemental strand, 22776990 - 22776592
Alignment:
| Q |
23 |
aagatgaagaagaattgtctattgatgatttatctcaaagacaagacacagaaatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaa |
122 |
Q |
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| T |
22776990 |
aagatgaagaagaattgtctattgatgatttatctcaaagacaagacacagagatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaa |
22776891 |
T |
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| Q |
123 |
cataagaaaggaatacattaaggtatggtggaaacctaatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagattta |
222 |
Q |
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| T |
22776890 |
cataagaaaggaatacattaaggtatggtggaaacataatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagattta |
22776791 |
T |
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| Q |
223 |
ccagatattcaaatttcgggggacactagtagatttaagtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacat |
322 |
Q |
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| T |
22776790 |
ccagatattcaaatttcgggggacactagtagatttaagtatacgaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacat |
22776691 |
T |
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| Q |
323 |
tgaaacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatc |
421 |
Q |
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| T |
22776690 |
tgaaacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtgtttatggttgataatgtggttagagttctttcaaaatatgatc |
22776592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 56 - 419
Target Start/End: Complemental strand, 40945571 - 40945208
Alignment:
| Q |
56 |
ctcaaagacaagacacagaaatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaacataagaaaggaatacattaaggtatggtggaa |
155 |
Q |
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||||||||||||| || || | ||||||||||||||||||||||| |||||||||||||| ||||| | |||||| |||||||| || ||||||||| |
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| T |
40945571 |
ctcaaagacaagatactgagctgaaacacattgtttttgggatagctgcttcatcaaatttatggaatacaagaaaagaatacatcaaaatatggtggag |
40945472 |
T |
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| Q |
156 |
acctaatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagatttaccagatattcaaatttcgggggacactagtaga |
255 |
Q |
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||| || |||||||||| || || ||| | ||||||||||||| |||| | |||| ||||| ||||||| ||| || | |||||| || | |
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| T |
40945471 |
accaaaacaaacaagaggtgttgtttggttagatcaaagagtgagtacacaaaggaacgaagggttacctgatattcgaatctcagatgacacttctaaa |
40945372 |
T |
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| Q |
256 |
tttaagtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttca |
355 |
Q |
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||| |||||||||||| |||||||| || || || || ||||| |||||| ||||||||||||||||||| ||||| ||| | ||||| |||||||| |
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| T |
40945371 |
tttcggtatacaaatcgacagggacaaaggtcagcattgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttg |
40945272 |
T |
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| Q |
356 |
tgatgggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatga |
419 |
Q |
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|||||||||||||||||||||| ||| | ||||||||||| |||||| |||||||||| ||||| |
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| T |
40945271 |
tgatgggagatgatgatactgtttttgttgttgataatgttgttagaattctttcaaagtatga |
40945208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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