View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15737_low_2 (Length: 335)

Name: NF15737_low_2
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15737_low_2
NF15737_low_2
[»] chr6 (21 HSPs)
chr6 (10-319)||(28185479-28185787)
chr6 (10-319)||(28181227-28181532)
chr6 (65-319)||(28297537-28297787)
chr6 (65-319)||(28514286-28514536)
chr6 (6-319)||(28227063-28227372)
chr6 (23-319)||(28234677-28234968)
chr6 (66-319)||(28242917-28243166)
chr6 (10-319)||(28325594-28325892)
chr6 (72-276)||(28098188-28098400)
chr6 (97-189)||(27337921-27338009)
chr6 (97-189)||(27398661-27398749)
chr6 (230-319)||(26949774-26949863)
chr6 (70-119)||(28150235-28150284)
chr6 (173-282)||(29826177-29826286)
chr6 (81-164)||(26848924-26849007)
chr6 (93-160)||(26975320-26975387)
chr6 (72-119)||(28139850-28139897)
chr6 (93-146)||(26635972-26636025)
chr6 (93-146)||(26741938-26741991)
chr6 (93-146)||(26959448-26959501)
chr6 (230-318)||(26811623-26811711)
[»] scaffold0038 (4 HSPs)
scaffold0038 (6-319)||(27561-27870)
scaffold0038 (23-319)||(34838-35130)
scaffold0038 (66-319)||(43079-43328)
scaffold0038 (10-319)||(116909-117207)
[»] scaffold0019 (1 HSPs)
scaffold0019 (12-319)||(58053-58356)
[»] chr2 (2 HSPs)
chr2 (82-162)||(3279969-3280049)
chr2 (93-146)||(17993536-17993589)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 28185787 - 28185479
Alignment:
Q  10 agatgaaacggttagaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaa---ttgaaatggtggc 106  Q
    ||||||||| || ||| ||||||| ||| |||| |||||| ||||||   ||| ||||||||||||||||||||||||| || |   |||||||||||||    
T  28185787 agatgaaacagtaagataatagaatattaaagagatatgacatatgtaagaatgtaaaacatgagtgaagtggggtacccagcaggattgaaatggtggc 28185688  T
Q  107 cagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatcca 206  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    ||||||||||||||||||||| ||||||||||||||    
T  28185687 cagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctat----ccttgttattttggaacttctttatatgatcatcca 28185592  T
Q  207 ttgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaa 306  Q
     ||||||||||||| | ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||     
T  28185591 gtgctttaccataactgcccgtgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagttaat 28185492  T
Q  307 gatgtggacaagt 319  Q
    |||||||||||||    
T  28185491 gatgtggacaagt 28185479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 28181532 - 28181227
Alignment:
Q  10 agatgaaacggttagaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaattgaaatggtggccag 109  Q
    |||| |||| ||| |||||||||||||||||||||||| |  ||||||| ||| ||||||||||||| | |  ||||||||| |||||  ||||||||||    
T  28181532 agataaaacagttcgaaaatagaacattcaagaaatatcacctatgtttgaatgtaaaacatgagtgcactacggtacctaggattgatttggtggccag 28181433  T
Q  110 agaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatccattg 209  Q
    |||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||     |||||||||||||||| |||||||||||||||||| ||    
T  28181432 agaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatg----cttgttattttggaacctctctatatgatcatccagtg 28181337  T
Q  210 ctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaagat 309  Q
    ||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| |||    
T  28181336 ctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgat 28181237  T
Q  310 gtggacaagt 319  Q
    ||||||||||    
T  28181236 gtggacaagt 28181227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 65 - 319
Target Start/End: Original strand, 28297537 - 28297787
Alignment:
Q  65 aaaacatgagtgaagtggggtacctagaattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgct 164  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |    
T  28297537 aaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgtt 28297636  T
Q  165 atatatccttgttattttggaacttctctatatgatcatccattgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaa 264  Q
    ||     ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |  ||||||||||| ||||| |||||||||||||||||    
T  28297637 att----cttgttattttggaacttctctatatgatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaa 28297732  T
Q  265 aattggcaaaactagacgcctactttccttgaagcagtgaaagatgtggacaagt 319  Q
    ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  28297733 aatcggcaaaactagacggctactttccttgaagcagtgaatgatgtggacaagt 28297787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 65 - 319
Target Start/End: Complemental strand, 28514536 - 28514286
Alignment:
Q  65 aaaacatgagtgaagtggggtacctagaattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgct 164  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |    
T  28514536 aaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgtt 28514437  T
Q  165 atatatccttgttattttggaacttctctatatgatcatccattgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaa 264  Q
    ||     ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |  ||||||||||| ||||| |||||||||||||||||    
T  28514436 att----cttgttattttggaacttctctatatgatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaa 28514341  T
Q  265 aattggcaaaactagacgcctactttccttgaagcagtgaaagatgtggacaagt 319  Q
    ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  28514340 aatcggcaaaactagacggctactttccttgaagcagtgaatgatgtggacaagt 28514286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 28227372 - 28227063
Alignment:
Q  6 agtgagatgaaacggttagaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaattgaaatggtgg 105  Q
    ||||||||||||  |||||||||||||| ||| ||||| ||||| ||||||   ||| ||||||||||||||| |  ||||||||| |||||  ||||||    
T  28227372 agtgagatgaaatagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacctaggattgatttggtgg 28227273  T
Q  106 ccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatcc 205  Q
    |||||||||||||||||||||||||||||  |||||||||| |||| ||| ||||||||||     |||||||||||||||| |||||||||||||||||    
T  28227272 ccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccatgctatg----cttgttattttggaacctctctatatgatcatcc 28227177  T
Q  206 attgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaa 305  Q
    | ||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||| | ||||||||||||| ||||    
T  28227176 agtgctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaa 28227077  T
Q  306 agatgtggacaagt 319  Q
     |||||||||||||    
T  28227076 tgatgtggacaagt 28227063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 28234968 - 28234677
Alignment:
Q  23 agaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaattgaaatggtggccagagaagttagcagt 122  Q
    ||||||||||  ||| |||||| || |||| ||| | |||  |||| ||||| ||| ||| |||||  | |||||||||||||||||| |||||||  ||    
T  28234968 agaaaatagagaattaaagaaacattatatttgtatgaatgaaaaatatgagggaattggtgtaccctggattgaaatggtggccagaaaagttagatgt 28234869  T
Q  123 ttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatccattgctttaccataagt 222  Q
    ||||||||||||  |||||||||| |||| ||||||||||     |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |    
T  28234868 ttgagtaagagccatcttccatttctgcaacctctccatg----ttatccttgttattttggaacttctttatatgatcatccagtgctttaccataact 28234773  T
Q  223 tcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaagatgtggacaagt 319  Q
     ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||| |||||| |||||| | || |||||||||||||    
T  28234772 gcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctcgaagca-taaatgatgtggacaagt 28234677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 66 - 319
Target Start/End: Complemental strand, 28243166 - 28242917
Alignment:
Q  66 aaacatgagtgaagtggggtacctagaattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgcta 165  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||       
T  28243166 aaacatgagttaagtggtgtacctagaactgaaatggtggccagagaagttagctgtttgagttagagcactcttccatttctgcaacctctccatg--- 28243070  T
Q  166 tatatccttgttattttggaacttctctatatgatcatccattgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaa 265  Q
      ||||| || |||||||||||||||| ||||| ||| ||| ||||||||||||| | ||  | ||||||| ||||| ||| |||||||||||||| |||    
T  28243069 -ttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcacgttagaaggttccacatcatagaaa 28242971  T
Q  266 attggcaaaactagacgcctactttccttgaagcagtgaaagatgtggacaagt 319  Q
    |||||||||||||| || | | ||| |||| ||||||||| |||||||||||||    
T  28242970 attggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagt 28242917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 28325892 - 28325594
Alignment:
Q  10 agatgaaacggttagaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaattgaaatggtggccag 109  Q
    ||||||| |||||||||||||||| ||| |||||||||   ||||||   || | ||||||| ||| |||| || |||| || | ||||||||||||| |    
T  28325892 agatgaatcggttagaaaatagaaaattaaagaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctg 28325796  T
Q  110 agaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatccattg 209  Q
    |||||||||||||||||||||||||  |||||||||| |||| |||||||||||    ||||| || ||||    ||| |||| ||||| ||  ||| ||    
T  28325795 agaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatgc----tatccgtgctatt----aacctctcaatatgctcggccagtg 28325704  T
Q  210 ctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaagat 309  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||| || |||| |||| ||||||| |||| | |||| |||||||||||||  ||    
T  28325703 ctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataat 28325604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 276
Target Start/End: Original strand, 28098188 - 28098400
Alignment:
Q  72 gagtgaagtggggtacctagaattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatg--------c 163  Q
    |||||||||  ||||||||| ||||||||||||||| || |||||||| | |||  |||||||  ||||||||||||||||||||| ||||             
T  28098188 gagtgaagtatggtacctaggattgaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcagcctcttcatgttgtcgttg 28098287  T
Q  164 tatatatccttgttattttggaacttctctatatgatcatccattgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaa 263  Q
    ||  | || ||||||||||||||| |||||  ||| | | | | ||||| ||||||| | ||| | ||||||||||||||||| |||||||| ||| |||    
T  28098288 taattttctttgttattttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacgtcacaaa 28098387  T
Q  264 aaattggcaaaac 276  Q
    |||| || |||||    
T  28098388 aaataggaaaaac 28098400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 27337921 - 27338009
Alignment:
Q  97 aaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaactt 189  Q
    ||||||||||| ||||||||||||| ||| ||||||||  |||||||||| | || ||||||||||     | ||||||||||||||||||||    
T  27337921 aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatg----ttttccttgttattttggaactt 27338009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 27398661 - 27398749
Alignment:
Q  97 aaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaactt 189  Q
    ||||||||||| ||||||||||||| ||| ||||||||  |||||||||| | || ||||||||||     | ||||||||||||||||||||    
T  27398661 aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatg----ttttccttgttattttggaactt 27398749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 26949863 - 26949774
Alignment:
Q  230 tgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaagatgtggacaagt 319  Q
    ||||||||||||||||| ||||| |||||||| |||| ||||| ||| || || |   ||||||||||| |||||| ||| |||||||||    
T  26949863 tgatgtcgcacgtgagaaggttctacatcatagaaaactggcagaacaaggcgacctttttccttgaagtagtgaatgatatggacaagt 26949774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 28150284 - 28150235
Alignment:
Q  70 atgagtgaagtggggtacctagaattgaaatggtggccagagaagttagc 119  Q
    |||||||||||||| ||||||| ||||||||||||||| || ||||||||    
T  28150284 atgagtgaagtgggatacctaggattgaaatggtggccggacaagttagc 28150235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 29826286 - 29826177
Alignment:
Q  173 ttgttattttggaacttctctatatgatcatccattgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggca 272  Q
    |||||||||| |||| |||||  | |||||  |||| ||||||||||| | ||  | ||||||||||| ||||| || ||||||||||| ||||| ||||    
T  29826286 ttgttatttttgaacctctcttcaagatcagtcattcctttaccataactcccagtctgatgtcgcacatgagaaggatccacatcatagaaaataggca 29826187  T
Q  273 aaactagacg 282  Q
    |||| |||||    
T  29826186 aaacgagacg 29826177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 26849007 - 26848924
Alignment:
Q  81 ggggtacctagaattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgct 164  Q
    |||||||| | ||||||||||||||||||| ||||||||||  ||  |||||||  ||||||||||| |||  | |||||||||    
T  26849007 ggggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgct 26848924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 26975387 - 26975320
Alignment:
Q  93 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctcca 160  Q
    |||||||||||||||||| |||||||||| |||  |||||||  ||||||||||| ||| || |||||    
T  26975387 attgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaaccgctcca 26975320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 28139897 - 28139850
Alignment:
Q  72 gagtgaagtggggtacctagaattgaaatggtggccagagaagttagc 119  Q
    |||| |||||||||||| | ||||||||||||||||||| ||||||||    
T  28139897 gagtcaagtggggtacccaaaattgaaatggtggccagaaaagttagc 28139850  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 26636025 - 26635972
Alignment:
Q  93 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccattt 146  Q
    |||||||||||||||||| |||||||||| |||  |||||||  ||||||||||    
T  26636025 attgaaatggtggccagataagttagcagcttggttaagagctttcttccattt 26635972  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 26741991 - 26741938
Alignment:
Q  93 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccattt 146  Q
    |||||||||||||||||| |||||||||| |||  |||||||  ||||||||||    
T  26741991 attgaaatggtggccagataagttagcagcttggttaagagctttcttccattt 26741938  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 26959501 - 26959448
Alignment:
Q  93 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccattt 146  Q
    |||||||||||||||||| |||||||||| |||  |||||||  ||||||||||    
T  26959501 attgaaatggtggccagataagttagcagcttggttaagagctttcttccattt 26959448  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 26811711 - 26811623
Alignment:
Q  230 tgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaagatgtggacaag 318  Q
    ||||||||||||||||| ||||||||| |||| |||| ||| | ||| || || |   ||||||||||| ||| || ||||||||||||    
T  26811711 tgatgtcgcacgtgagaaggttccacaccatagaaaactggtagaacaaggcgacctttttccttgaagtagttaatgatgtggacaag 26811623  T

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Target: scaffold0038 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 27870 - 27561
Alignment:
Q  6 agtgagatgaaacggttagaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaattgaaatggtgg 105  Q
    ||||||||||||  |||||||||||||| ||| ||||| ||||| ||||||   ||| ||||||||||||||| |  ||||||||| |||||  ||||||    
T  27870 agtgagatgaaatagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacctaggattgatttggtgg 27771  T
Q  106 ccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatcc 205  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||     |||||||||||||||| |||||||||||||||||    
T  27770 ccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatg----cttgttattttggaacctctctatatgatcatcc 27675  T
Q  206 attgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaa 305  Q
    | ||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||| | ||||||||||||| ||||    
T  27674 agtgctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaa 27575  T
Q  306 agatgtggacaagt 319  Q
     |||||||||||||    
T  27574 tgatgtggacaagt 27561  T

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Target: scaffold0038; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 35130 - 34838
Alignment:
Q  23 agaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaattgaaatggtggccagagaagttagcagt 122  Q
    ||||||||||  ||| |||||| || |||| ||| | |||  |||| ||||| ||| ||| |||||  | |||||||||||||||||| |||||||  ||    
T  35130 agaaaatagagaattaaagaaacattatatttgtatgaatgaaaaatatgagggaattggtgtaccctggattgaaatggtggccagaaaagttagatgt 35031  T
Q  123 ttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatccattgctttaccataagt 222  Q
    ||||||||||||  |||||||||| |||| ||||||||||     |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |    
T  35030 ttgagtaagagccatcttccatttctgcaacctctccatg----ttatccttgttattttggaacttctttatatgatcatccagtgctttaccataact 34935  T
Q  223 tcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaagatgtggacaagt 319  Q
     ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  34934 gcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagt 34838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 66 - 319
Target Start/End: Complemental strand, 43328 - 43079
Alignment:
Q  66 aaacatgagtgaagtggggtacctagaattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgcta 165  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||       
T  43328 aaacatgagttaagtggtgtacctagaactgaaatggtggccagagaagttagctgtttgagttagagcactcttccatttctgcaacctctccatg--- 43232  T
Q  166 tatatccttgttattttggaacttctctatatgatcatccattgctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaa 265  Q
      ||||| || |||||||||||||||| ||||| ||| ||| ||||||||||||| | ||  | ||||||| ||||| ||| |||||||||||||| |||    
T  43231 -ttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcacgttagaaggttccacatcatagaaa 43133  T
Q  266 attggcaaaactagacgcctactttccttgaagcagtgaaagatgtggacaagt 319  Q
    |||||||||||||| || | | ||| |||| ||||||||| |||||||||||||    
T  43132 attggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagt 43079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 117207 - 116909
Alignment:
Q  10 agatgaaacggttagaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaattgaaatggtggccag 109  Q
    ||||||| |||||||||||||||| ||| |||||||||   ||||||   || | ||||||| ||| |||| || |||| || | ||||||||||||| |    
T  117207 agatgaatcggttagaaaatagaaaattaaagaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctg 117111  T
Q  110 agaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatccattg 209  Q
    |||||||||||||||||||||||||  |||||||||| |||| |||||||||||    ||||| || ||||    ||| |||| ||||| ||  ||| ||    
T  117110 agaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatgc----tatccgtgctatt----aacctctcaatatgctcggccagtg 117019  T
Q  210 ctttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaagat 309  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||| || |||| |||| ||||||| |||| | |||| |||||||||||||  ||    
T  117018 ctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataat 116919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 58053 - 58356
Alignment:
Q  12 atgaaacggttagaaaatagaacattcaagaaatatgatatatgtttaaatataaaacatgagtgaagtggggtacctagaattgaaatggtggccagag 111  Q
    |||||||||||| ||||||||| ||| |||| |||||| ||||||   ||| |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  58053 atgaaacggttataaaatagaatattaaagagatatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagag 58152  T
Q  112 aagttagcagtttgagtaagagcactcttccatttatgcagcctctccatgctatatatccttgttattttggaacttctctatatgatcatccattgct 211  Q
    ||||||||||| |||||||||||  |||||||||| |||| |||||| ||||    |||||||| ||||||||||| |||| ||||| ||  | | ||||    
T  58153 aagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgc----tatccttgctattttggaacctctcaatatgctcggcaagtgct 58248  T
Q  212 ttaccataagttcccttgtgatgtcgcacgtgagatggttccacatcataaaaaattggcaaaactagacgcctactttccttgaagcagtgaaagatgt 311  Q
    ||||||||| |||| |  ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||| |  ||||| ||||||||||| |||||    
T  58249 ttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctcgaagcagtgaatgatgt 58348  T
Q  312 ggacaagt 319  Q
    ||||||||    
T  58349 ggacaagt 58356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 3280049 - 3279969
Alignment:
Q  82 gggtacctagaattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttatgcagcctctccatg 162  Q
    |||||||||| ||| ||||||||||| || |||||||| | |||  |||||||  ||||||||||||||| ||||| ||||    
T  3280049 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatg 3279969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 17993536 - 17993589
Alignment:
Q  93 attgaaatggtggccagagaagttagcagtttgagtaagagcactcttccattt 146  Q
    |||||||||||||||||| |||||||||| |||  |||||||  ||||||||||    
T  17993536 attgaaatggtggccagataagttagcagcttggttaagagctttcttccattt 17993589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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