View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15737_low_4 (Length: 211)

Name: NF15737_low_4
Description: NF15737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15737_low_4
NF15737_low_4
[»] chr6 (22 HSPs)
chr6 (21-206)||(4835522-4835707)
chr6 (21-70)||(4259661-4259710)
chr6 (21-70)||(4299328-4299377)
chr6 (21-70)||(4514628-4514677)
chr6 (21-70)||(4256131-4256180)
chr6 (25-70)||(4461699-4461744)
chr6 (20-70)||(4516897-4516947)
chr6 (29-70)||(3172317-3172358)
chr6 (25-70)||(4266677-4266722)
chr6 (29-70)||(4481269-4481310)
chr6 (29-70)||(4489870-4489911)
chr6 (29-70)||(4561080-4561121)
chr6 (21-70)||(4564287-4564336)
chr6 (21-70)||(4626527-4626576)
chr6 (28-70)||(4470379-4470421)
chr6 (25-70)||(4458171-4458216)
chr6 (29-70)||(4503912-4503953)
chr6 (21-62)||(4568628-4568669)
chr6 (29-70)||(4574884-4574925)
chr6 (21-70)||(4598747-4598796)
chr6 (21-70)||(4622716-4622765)
chr6 (70-182)||(4829206-4829319)
[»] chr7 (1 HSPs)
chr7 (21-70)||(3086996-3087045)
[»] scaffold0288 (1 HSPs)
scaffold0288 (21-66)||(3226-3271)
[»] chr5 (1 HSPs)
chr5 (25-70)||(24103575-24103620)
[»] scaffold0477 (1 HSPs)
scaffold0477 (21-68)||(4193-4240)
[»] scaffold0199 (1 HSPs)
scaffold0199 (21-70)||(39-88)
[»] chr8 (1 HSPs)
chr8 (21-70)||(1674802-1674851)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 1e-67; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 4835522 - 4835707
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaacacatcggcaatcatctgagccgcactttcccaataagtcaaatttgccg 120  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||| ||||     
T  4835522 taggttccgatctttggaaggaagatacaaaatgtcttgaatggcttgaacacatcggcaatcatctgagttgcactttcccaatacgtcaaatctgcca 4835621  T
Q  121 cttttccaactttgagacgcaagttttcgttggtgtattgacagatacaaatactatgtcagttgtataacatattcttcgacatc 206  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| || || ||||||    
T  4835622 cttttccaacattgaggcgcaagtttttgttggtgtattgacagatacaaacactatgtcagctgtataacatgttttttgacatc 4835707  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 4259661 - 4259710
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  4259661 taggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaa 4259710  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 4299328 - 4299377
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  4299328 taggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaa 4299377  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 4514628 - 4514677
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  4514628 taggttccaatctttggaaagaagatactaaatgtcttgaatggcttgaa 4514677  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 4256131 - 4256180
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  4256131 taggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaa 4256180  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 4461744 - 4461699
Alignment:
Q  25 ttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||    
T  4461744 ttccaatctttggaaagaagatactaaatgtcttgaatggcttgaa 4461699  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 4516947 - 4516897
Alignment:
Q  20 ataggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    |||||||| ||||||||||| |||||||  |||||||||||||||||||||    
T  4516947 ataggttctaatctttggaaagaagatatgaaatgtcttgaatggcttgaa 4516897  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 3172358 - 3172317
Alignment:
Q  29 aatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  3172358 aatctttggaaagaagatactaaatgtcttgaatggcttgaa 3172317  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 4266677 - 4266722
Alignment:
Q  25 ttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||    
T  4266677 ttccaatctttggaaagaagatactaaatgtcttgagtggcttgaa 4266722  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 4481310 - 4481269
Alignment:
Q  29 aatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  4481310 aatctttggaaagaagatactaaatgtcttgaatggcttgaa 4481269  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 4489870 - 4489911
Alignment:
Q  29 aatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  4489870 aatctttggaaagaagatactaaatgtcttgaatggcttgaa 4489911  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 4561121 - 4561080
Alignment:
Q  29 aatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  4561121 aatctttggaaagaagatactaaatgtcttgaatggcttgaa 4561080  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 4564336 - 4564287
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    |||||||||| |||||||| |||||||| || ||||||||||||||||||    
T  4564336 taggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaa 4564287  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 4626576 - 4626527
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||||||| ||||| || || ||||||||||||||||||    
T  4626576 taggttccaatctttggaaagaagacaccaattgtcttgaatggcttgaa 4626527  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 4470421 - 4470379
Alignment:
Q  28 caatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    |||||||||||| |||||||| ||||||||||| |||||||||    
T  4470421 caatctttggaaagaagatactaaatgtcttgagtggcttgaa 4470379  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 4458216 - 4458171
Alignment:
Q  25 ttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||| ||| |||| ||||||||||| |||||||||    
T  4458216 ttccaatctttggaaagaatatactaaatgtcttgagtggcttgaa 4458171  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 4503912 - 4503953
Alignment:
Q  29 aatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||| |||||||| ||||||||||| |||||||||    
T  4503912 aatctttggaaagaagatactaaatgtcttgattggcttgaa 4503953  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 4568669 - 4568628
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaat 62  Q
    ||||||||||||||||||| |||||||  |||||||||||||    
T  4568669 taggttccaatctttggaaagaagatatgaaatgtcttgaat 4568628  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 4574925 - 4574884
Alignment:
Q  29 aatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  4574925 aatctttggaaagaagatactaaatgtcttgaatggattgaa 4574884  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 4598796 - 4598747
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||| ||||||||||||| |||||||| || |||||||| |||||||||    
T  4598796 taggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaa 4598747  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 4622765 - 4622716
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||||||| |||||||  || |||||||| |||||||||    
T  4622765 taggttccaatctttggaaagaagatatcaagtgtcttgagtggcttgaa 4622716  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 4829206 - 4829319
Alignment:
Q  70 acacatcggcaatcatctgagccgcactttcccaataagtcaaatttgccgcttttccaactttgaga-cgcaagttttcgttggtgtattgacagatac 168  Q
    ||||||||||||||| | ||| |||||| |||||||| ||||||| | |  |||||||| |  ||||| ||| |||||| ||  ||||||  ||||||||    
T  4829206 acacatcggcaatcacccgagtcgcactctcccaatacgtcaaatctactacttttccagccctgagaccgcgagtttttgtcagtgtatcaacagatac 4829305  T
Q  169 aaatactatgtcag 182  Q
    ||| ||||||||||    
T  4829306 aaacactatgtcag 4829319  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 3087045 - 3086996
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  3087045 taggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaa 3086996  T

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Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 3226 - 3271
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggct 66  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||    
T  3226 taggttccaatctttggaaagaagataccaagtgtcttgaatggct 3271  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 24103620 - 24103575
Alignment:
Q  25 ttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||    
T  24103620 ttccaatctttggaaagaagatactaaatgtcttgagtggcttgaa 24103575  T

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Target: scaffold0477 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 4193 - 4240
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttg 68  Q
    ||||||||||||||||||| |||||||| || |||||||| |||||||    
T  4193 taggttccaatctttggaaagaagataccaagtgtcttgagtggcttg 4240  T

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Target: scaffold0199 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 88 - 39
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    |||||||||| |||||||| ||||||||  | ||||||||||||||||||    
T  88 taggttccaacctttggaaagaagatactgagtgtcttgaatggcttgaa 39  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 1674851 - 1674802
Alignment:
Q  21 taggttccaatctttggaaggaagatacaaaatgtcttgaatggcttgaa 70  Q
    |||||||||| |||||||| ||||||||  | ||||||||||||||||||    
T  1674851 taggttccaacctttggaaagaagatactgagtgtcttgaatggcttgaa 1674802  T

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