View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15738_high_10 (Length: 229)
Name: NF15738_high_10
Description: NF15738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15738_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 42367147 - 42367018
Alignment:
| Q |
86 |
tcagttattggtggtttactataagatacgataagcatgcgagatccaacggttctcatttatagacaaaaaccaaagggctaaaattaataagattaat |
185 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42367147 |
tcagttgttggtggtttactataagatacgataagcatgcgagatccaacggttctcatttatagacaaaaactaaagggctaaaattaataagattaat |
42367048 |
T |
|
| Q |
186 |
aagtactatggtagaccaccttcgatgatg |
215 |
Q |
| |
|
||| |||| ||||||||||||| |||||| |
|
|
| T |
42367047 |
aaggtctatcgtagaccaccttcaatgatg |
42367018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 1409909 - 1409798
Alignment:
| Q |
97 |
tggtttactataagatacgataagcatgcgagatccaacggttctcatttatagacaaaaaccaaagggctaaaattaataagattaataagtactatgg |
196 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
1409909 |
tggtttactataagatacgatagacatgcgtgatccaacggttctcatttatagacaaaaatcaaagggctcaaattaaaaagattaataaagtctatgg |
1409810 |
T |
|
| Q |
197 |
tagaccaccttc |
208 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1409809 |
tagaccaccttc |
1409798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University