View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15738_high_11 (Length: 204)
Name: NF15738_high_11
Description: NF15738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15738_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 9844412 - 9844243
Alignment:
| Q |
21 |
attcttagattttagacctgactcaactccacaaaactgattggcaaggtgagcattgcacacactttataaactctatttaggccacatcactattcaa |
120 |
Q |
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| T |
9844412 |
attcttagattttagacctgactcaactccacaaaactgattggcaaggtgagcattgcacacactttataaactctatttaggccacatcactattcaa |
9844313 |
T |
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| Q |
121 |
cacgggacatgnnnnnnnatccaataaatacataagacatagctgagtagatgacgtatggtgtcctatg |
190 |
Q |
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| T |
9844312 |
cacgggacatgtttttttatccaataaatacataagacatagctgagtagatgacgtatggtgtcctatg |
9844243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 9833593 - 9833424
Alignment:
| Q |
21 |
attcttagattttagacctgactcaactccacaaaactgattggcaaggtgagcattgcacacactttataaactctatttaggccacatcactattcaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
9833593 |
attcttagattttagacctgactcaactccacaaaactgattggcaaggtgagcattgcacacactttataaactctatttaggccacgtcactaatcaa |
9833494 |
T |
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| Q |
121 |
cacgggacatgnnnnnnnatccaataaatacataagacatagctgagtagatgacgtatggtgtcctatg |
190 |
Q |
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||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
9833493 |
cacgggacatgtttttttatccaataaatacaaaagacgtagttgagtagatgacgtatggtgtcctatg |
9833424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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