View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15738_high_2 (Length: 522)

Name: NF15738_high_2
Description: NF15738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15738_high_2
NF15738_high_2
[»] chr4 (27 HSPs)
chr4 (20-518)||(5665318-5665815)
chr4 (20-102)||(49983863-49983945)
chr4 (20-96)||(18414792-18414868)
chr4 (18-102)||(20870895-20870979)
chr4 (20-95)||(49984066-49984141)
chr4 (20-102)||(4416546-4416628)
chr4 (20-102)||(11306514-11306596)
chr4 (20-102)||(18414947-18415029)
chr4 (18-95)||(20268933-20269011)
chr4 (18-94)||(4592624-4592700)
chr4 (20-102)||(37724509-37724591)
chr4 (26-95)||(2515765-2515834)
chr4 (18-95)||(37724692-37724769)
chr4 (18-94)||(31141747-31141823)
chr4 (18-102)||(54702250-54702334)
chr4 (27-102)||(17524464-17524539)
chr4 (18-89)||(45170694-45170765)
chr4 (18-95)||(4416745-4416822)
chr4 (20-89)||(48845782-48845851)
chr4 (21-93)||(20871101-20871173)
chr4 (20-95)||(45505327-45505402)
chr4 (20-85)||(36752929-36752994)
chr4 (29-94)||(45505138-45505203)
chr4 (29-102)||(48845974-48846047)
chr4 (30-90)||(17524284-17524344)
chr4 (20-88)||(46397376-46397444)
chr4 (18-95)||(21376117-21376194)
[»] chr1 (23 HSPs)
chr1 (20-102)||(8718457-8718539)
chr1 (27-101)||(48171698-48171772)
chr1 (18-96)||(18519385-18519463)
chr1 (18-94)||(143082-143158)
chr1 (18-102)||(22792358-22792442)
chr1 (20-100)||(31872749-31872829)
chr1 (26-92)||(34518225-34518291)
chr1 (31-96)||(14420046-14420111)
chr1 (18-99)||(19987402-19987483)
chr1 (26-102)||(35795577-35795653)
chr1 (20-94)||(31872868-31872942)
chr1 (30-94)||(25622659-25622723)
chr1 (20-94)||(142881-142955)
chr1 (20-102)||(33459965-33460047)
chr1 (26-92)||(34518040-34518106)
chr1 (20-94)||(42604700-42604774)
chr1 (52-93)||(33460160-33460201)
chr1 (18-94)||(3073046-3073122)
chr1 (52-102)||(14419886-14419936)
chr1 (58-96)||(48171542-48171580)
chr1 (20-88)||(3075195-3075263)
chr1 (18-94)||(22792546-22792622)
chr1 (52-92)||(36783345-36783385)
[»] chr3 (8 HSPs)
chr3 (18-102)||(54341271-54341355)
chr3 (18-96)||(33419608-33419686)
chr3 (31-102)||(37285809-37285879)
chr3 (29-86)||(48618559-48618616)
chr3 (30-102)||(30547992-30548064)
chr3 (26-88)||(19540900-19540962)
chr3 (18-88)||(51388033-51388103)
chr3 (26-102)||(33419802-33419878)
[»] scaffold0548 (1 HSPs)
scaffold0548 (20-102)||(3292-3374)
[»] chr6 (12 HSPs)
chr6 (20-94)||(10567533-10567607)
chr6 (20-102)||(10567722-10567804)
chr6 (21-99)||(32629314-32629392)
chr6 (20-94)||(6611681-6611755)
chr6 (18-102)||(29675130-29675215)
chr6 (26-95)||(34829823-34829892)
chr6 (20-95)||(29674947-29675022)
chr6 (18-85)||(32629131-32629198)
chr6 (18-95)||(28613234-28613311)
chr6 (35-87)||(17342973-17343025)
chr6 (59-95)||(19279068-19279104)
chr6 (29-85)||(28705759-28705815)
[»] chr2 (17 HSPs)
chr2 (18-100)||(29526856-29526938)
chr2 (20-102)||(44995320-44995402)
chr2 (20-94)||(3217355-3217429)
chr2 (18-102)||(13490242-13490326)
chr2 (20-100)||(3221089-3221169)
chr2 (27-95)||(43513826-43513894)
chr2 (20-99)||(15988513-15988592)
chr2 (26-102)||(27956801-27956877)
chr2 (45-96)||(14473796-14473847)
chr2 (20-94)||(43971781-43971856)
chr2 (18-100)||(13525241-13525323)
chr2 (20-94)||(15988052-15988125)
chr2 (21-102)||(14473548-14473629)
chr2 (18-95)||(24015879-24015956)
chr2 (18-94)||(1353100-1353176)
chr2 (18-102)||(24284060-24284144)
chr2 (20-95)||(26845448-26845524)
[»] chr5 (3 HSPs)
chr5 (26-89)||(33992411-33992474)
chr5 (26-130)||(16642983-16643082)
chr5 (29-93)||(33992605-33992669)
[»] chr8 (17 HSPs)
chr8 (20-102)||(34439484-34439566)
chr8 (18-93)||(16049548-16049623)
chr8 (18-96)||(4623137-4623215)
chr8 (30-96)||(25879647-25879713)
chr8 (20-90)||(34687824-34687894)
chr8 (52-92)||(7535524-7535564)
chr8 (20-95)||(18429483-18429558)
chr8 (18-85)||(18935121-18935188)
chr8 (20-95)||(34439292-34439367)
chr8 (20-102)||(4623333-4623414)
chr8 (20-102)||(23871168-23871250)
chr8 (20-102)||(25879815-25879897)
chr8 (29-93)||(165197-165261)
chr8 (27-96)||(7644856-7644925)
chr8 (52-93)||(18548640-18548681)
chr8 (52-88)||(7535364-7535400)
chr8 (27-87)||(7645059-7645119)
[»] chr7 (13 HSPs)
chr7 (20-102)||(7460641-7460723)
chr7 (20-90)||(24188171-24188241)
chr7 (20-99)||(22566373-22566450)
chr7 (18-102)||(36469795-36469879)
chr7 (20-89)||(7460844-7460913)
chr7 (30-102)||(24185748-24185820)
chr7 (18-102)||(34535944-34536028)
chr7 (26-96)||(34535767-34535837)
chr7 (18-102)||(6376434-6376518)
chr7 (17-89)||(7150186-7150258)
chr7 (18-93)||(8560697-8560772)
chr7 (58-96)||(6376626-6376664)
chr7 (31-95)||(38978370-38978434)
[»] scaffold0056 (2 HSPs)
scaffold0056 (20-102)||(62984-63066)
scaffold0056 (27-95)||(62803-62871)
[»] scaffold1484 (1 HSPs)
scaffold1484 (185-240)||(171-226)


Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Complemental strand, 5665815 - 5665318
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcacttcacttgaccatttaaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5665815 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcacttcacttgaccatttaaag 5665716  T
Q  120 atttgggttgaatattcatgcatgcctcaactttcgaaatacaattggtgaaatagttgttatcagactgataaatttcaagaaaaagcaagctcattaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5665715 atttgggttgaatattcatgcatgcctcaactttcgaaatacaattggtgaaatagttgttatcagactgataaatttcaagaaaaagcaagctcattaa 5665616  T
Q  220 taacaaacaagtgcatatgcagtgcaatggataagggaatcacgatgttacaaaacactaagtggccacattatctttagaacaactacatgaaaataaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5665615 taacaaacaagtgcatatgcagtgcaatggataagggaatcacgatgttacaaaacactaagtggccacattatttttagaacaactacatgaaaataaa 5665516  T
Q  320 aacaactacattagtgataagaaaagtgcataatcacataaaatttgggccaaacccggaagtgtcatgctggtcgaccatgatattgtcgaactcctcc 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5665515 aacaactacattagtgataagaaaagtgcataatcacataaaatttgggccaaacccggaagtgtcatgctggtcgaccatgatattgtcaaactcctcc 5665416  T
Q  420 tcctttccctggtcaaagtcctcctcctcaatctattgctccctttaggcagctatatccgtctgctcccgaaaaataaccccttatcctctcctttgt 518  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||    
T  5665415 tcctttccatggtcaaagtcctcctcctcaatctattgctccctttaggcagctatatctgtctgctcccg-aaaataaccccttaccctcttctttgt 5665318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 49983863 - 49983945
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||||||||||||| ||||| || ||||||||||||||||||||| ||  ||||||||||||| |||||||||||    
T  49983863 aagttggtcccttatgttttaaaaattttaagttggttcaaaacgttactcacatttgaataagttagtccattccgtcactt 49983945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 18414792 - 18414868
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    ||||| ||||||||  |||||| |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||    
T  18414792 aagttggtcccttacattttaaaaatttcaagttggttcaaaacgttactcacgttggaataagttagtctcttccg 18414868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 20870895 - 20870979
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| |||||||| ||||||| | |||||| || || ||||||||||||||| ||| |||||||||||||||||||||||||    
T  20870895 ttaagttggtcccttacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagttagtcccttccgtcactt 20870979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 49984141 - 49984066
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||| ||||||||||||||||   |||||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  49984141 aagttggtcccttatgttttaaagttttcaagttggtccaaaacgttactcacgttggaataagttagtcccttcc 49984066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 4416546 - 4416628
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||| ||| ||||||| | |||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  4416546 aagttggtcctttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagttagtcccttcagtcactt 4416628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 11306596 - 11306514
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||| ||| ||||||||||||||||| |||||||    
T  11306596 aagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataagttagtcccttctgtcactt 11306514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 18415029 - 18414947
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||||  ||||||| | |||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  18415029 aagttggtcccttgcgttttaaaagtttcaagttggtccaaaacgttactcacgttgaaataagttagtctcttctgtcactt 18414947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 20268933 - 20269011
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaa-tttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||||| |||||||||||||| | || |||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  20268933 ttaagttggtcccttatgtttttaaaagtttcaagttggttcaaaacgttactcacattgaaataagttagtctcttcc 20269011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 4592700 - 4592624
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||  ||||| |||||| ||||    
T  4592700 ttaagttggtcccttatgttttaacagtttcaagttggttcaaaacgttactcacattagaataaattagtctcttc 4592624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 37724509 - 37724591
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| ||||||||  |||||| | |||||| ||||| |||||||||||||| |||| |||||||||||| ||||||||||||    
T  37724509 aagttggtcccttacattttaaaattttcaaattggtccaaaacgttactcatgttggaataagttagtctcttccgtcactt 37724591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 2515765 - 2515834
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||| ||  ||||||| ||||||||||    
T  2515765 gtcctttatgttttaccaatttcaagttggttcaaaacgttactcacattagaataagtcagtcccttcc 2515834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 37724769 - 37724692
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    |||||||  ||||||| ||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||| |||||    
T  37724769 ttaagttgatcccttaggttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagttagtctcttcc 37724692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 31141747 - 31141823
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||||| |||||||||||||||| | |||||| || || |||||||||| ||||||||| ||||| ||||||||||    
T  31141747 ttaagttagtcccttatgttttaaaagtttcaaattcgtccaaaacgttaatcacgttgatataagctagtcccttc 31141823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 54702334 - 54702250
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| |||||||||||||||||| ||| || ||| ||||||| ||||||||| ||  ||||||| |||| ||||||||||||    
T  54702334 ttaagttggtcccttatgttttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttccgtcactt 54702250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 17524539 - 17524464
Alignment:
Q  27 tcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||||||||||| | ||| || ||||  |||||||||||| |||||| ||||||||||||||||| |||||||    
T  17524539 tcccttatgttttaaaagttttaagttggaccaaaacgttacttacgttggaataagttagtcccttcagtcactt 17524464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 45170694 - 45170765
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtc 89  Q
    ||||||| |||||||| ||||||| | |||||| ||||| ||||| ||||||||||||| ||||||||||||    
T  45170694 ttaagttggtcccttaggttttaaaagtttcaagttggtccaaaatgttactcacgttggaataagttagtc 45170765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 4416822 - 4416745
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||||| ||||||||  |||||| | ||| || ||||| ||||||||||||||| ||| ||||||||||||||||||    
T  4416822 ttaagttggtcccttacattttaaaagttttaagttggtccaaaacgttactcacattggaataagttagtcccttcc 4416745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 48845782 - 48845851
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtc 89  Q
    ||||| |||||||| ||||||| ||||| || ||||| ||||| ||||||||| ||||||||||||||||    
T  48845782 aagttggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacattgaaataagttagtc 48845851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 20871173 - 20871101
Alignment:
Q  21 agtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtccctt 93  Q
    |||| |||| ||||||||||| | |||||| |||||| |||||||| ||||||||| |||||||| |||||||    
T  20871173 agttggtcctttatgttttaaaagtttcaagttggtttaaaacgttgctcacgttggaataagttggtccctt 20871101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 45505402 - 45505327
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||| ||  |||||||||||| |||||    
T  45505402 aagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattagaataagttagtctcttcc 45505327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 36752929 - 36752994
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagtt 85  Q
    ||||| |||||||  ||||||| |||||||| ||||| ||||||||||| ||||||| ||||||||    
T  36752929 aagttggtcccttgcgttttaaaaatttcaagttggtccaaaacgttacccacgttggaataagtt 36752994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 45505138 - 45505203
Alignment:
Q  29 ccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||| ||||||| | |||||| ||||| ||||||| ||||||||||| ||||| |||||||||||    
T  45505138 ccttacgttttaaaagtttcaagttggtccaaaacgctactcacgttggaataaattagtcccttc 45505203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 48846047 - 48845974
Alignment:
Q  29 ccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||||||||| | |||||| ||||   |||||||||||||||||| ||||| |||||| |||| |||||||    
T  48846047 ccttatgttttaaaagtttcaagttggactaaaacgttactcacgttggaataaattagtctcttcagtcactt 48845974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 17524284 - 17524344
Alignment:
Q  30 cttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcc 90  Q
    |||||||||||| | |||||| ||| | ||||||||||||||| ||| |||||||||||||    
T  17524284 cttatgttttaaaagtttcaaattgatccaaaacgttactcacattggaataagttagtcc 17524344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 46397376 - 46397444
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagt 88  Q
    ||||| |||||||| ||||||| | ||| || ||||| |||||||||||||||||| |||||| |||||    
T  46397376 aagttggtcccttacgttttaaaagttttaagttggtccaaaacgttactcacgttcaaataaattagt 46397444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 21376117 - 21376194
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    |||||||  |||||||| |||||| | |||||| ||||||||||| | ||  ||| |||||||||||||||| |||||    
T  21376117 ttaagttgatcccttatattttaaaagtttcaagttggttcaaaatggtatacacattgaaataagttagtcacttcc 21376194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 8718539 - 8718457
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    |||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||| |||||||||||| |||| |||||||    
T  8718539 aagtttgtcccttatgttttaaaattttcaagttggttcaaaacgttactcacattggaataagttagtctcttctgtcactt 8718457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 48171772 - 48171698
Alignment:
Q  27 tcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcact 101  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  48171772 tcccttatgttttaaaagtttcaagttggttcaaaacgttactcacatttgaataagttagtcccttccgtcact 48171698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 18519385 - 18519463
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    ||||||| |||||||| ||||||| |||||||| ||| |  |||||||||||||| |||||||||||||||||||||||    
T  18519385 ttaagttggtcccttacgttttaaaaatttcaagttgatataaaacgttactcactttgaaataagttagtcccttccg 18519463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 143158 - 143082
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||| ||||    
T  143158 ttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttgcaataagttagtctcttc 143082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 22792358 - 22792442
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| |||| ||||||||||| | |||||  ||| ||||||||||||||||  ||||||||||||||| |||||||||||||    
T  22792358 ttaagttggtccgttatgttttaaaagtttcatgttgattcaaaacgttactcatattgaaataagttagtaccttccgtcactt 22792442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 31872749 - 31872829
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcac 100  Q
    ||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||| ||||||||||||||||| |||| ||||    
T  31872749 aagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattgaaataagttagtccattccatcac 31872829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 34518291 - 34518225
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtccct 92  Q
    |||||||| ||||||| |||||||| ||||| ||||||||||||||||||  |||||||||||||||    
T  34518291 gtcccttacgttttaaaaatttcaagttggtccaaaacgttactcacgttagaataagttagtccct 34518225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 14420111 - 14420046
Alignment:
Q  31 ttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    |||||||||||  ||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||    
T  14420111 ttatgttttaaagatttcaagttggtccaaaacgttactcacgttggaataagttagtctcttccg 14420046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 19987402 - 19987483
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtca 99  Q
    ||||||| |||||||| ||||||| | |||||| ||| | ||||||||||||||| ||| ||||||||||||||||| ||||    
T  19987402 ttaagttggtcccttaagttttaaaagtttcaagttgatccaaaacgttactcacattggaataagttagtcccttcagtca 19987483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 35795653 - 35795577
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||| |   |||||||||||| ||||| ||||||    
T  35795653 gtcccttatgttttaaaagtttcaagttggttcaaaacgttactcacataagaataagttagtctcttccatcactt 35795577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 31872942 - 31872868
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||||||| ||||||  |||||||||    
T  31872942 aagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagccagtcccttc 31872868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 25622659 - 25622723
Alignment:
Q  30 cttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    |||||||||| | | |||||| ||||||||||||||||||||| ||| |||||||||||| ||||    
T  25622659 cttatgttttgaaagtttcaagttggttcaaaacgttactcacattggaataagttagtctcttc 25622723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 142881 - 142955
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||| |||||||||||||||| | |||||| || ||| ||||||||||| || ||| | |||||||||||||||    
T  142881 aagttggtcccttatgttttaaaagtttcaaatttgtttaaaacgttacttacattggagtaagttagtcccttc 142955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 33459965 - 33460047
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||| ||| ||||||| | |||||| ||||| ||||| ||||| ||||||  ||||| |||||||||||||||||||    
T  33459965 aagttggtcctttacgttttaaaagtttcaagttggtccaaaatgttacgcacgttataataaattagtcccttccgtcactt 33460047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 34518040 - 34518106
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtccct 92  Q
    ||||| || ||||||| | ||| || ||||||||||||||||||||| ||||| |||||||||||||    
T  34518040 gtcccctacgttttaaaagttttaagttggttcaaaacgttactcacattgaattaagttagtccct 34518106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 42604700 - 42604774
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||| |||||||  ||||||| | |||||| |||||  |||||||||||||||||| ||||||||||| |||||    
T  42604700 aagttggtccctttagttttaaaagtttcaagttggtctaaaacgttactcacgttggaataagttagttccttc 42604774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 33460201 - 33460160
Alignment:
Q  52 ttggttcaaaacgttactcacgttgaaataagttagtccctt 93  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  33460201 ttggtccaaaacgttactcacgttggaataagttagtccctt 33460160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 3073046 - 3073122
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||||| ||| |||| ||||||| | |||||| |||||  |||| |||| |||||||| |||||||||||||||||    
T  3073046 ttaagttggtctcttacgttttaaaagtttcaagttggtctaaaatgttattcacgttggaataagttagtcccttc 3073122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 14419886 - 14419936
Alignment:
Q  52 ttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    |||||||||||| |||| ||||| | |||||||||||| ||||||||||||    
T  14419886 ttggttcaaaacattacccacgtcggaataagttagtctcttccgtcactt 14419936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 48171542 - 48171580
Alignment:
Q  58 caaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  48171542 caaaacgttactcacgttggaataagttagtccattccg 48171580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 3075263 - 3075195
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagt 88  Q
    ||||| |||| ||| ||||||| | |||||| || || ||||||||||||||| ||| |||||||||||    
T  3075263 aagttggtccattacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagttagt 3075195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 22792622 - 22792546
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||||| |||||||| |||| ||   |||||| || || ||||||||||||||| ||| |||||||||||| ||||    
T  22792622 ttaagttggtcccttacgtttgaaaggtttcaagttagtccaaaacgttactcacattggaataagttagtcgcttc 22792546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 36783385 - 36783345
Alignment:
Q  52 ttggttcaaaacgttactcacgttgaaataagttagtccct 92  Q
    ||||||||||||||| ||||| ||| |||||||||||||||    
T  36783385 ttggttcaaaacgttgctcacattgtaataagttagtccct 36783345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 54341271 - 54341355
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||||||| ||||||| |||| ||||||||||||    
T  54341271 ttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagtcagtctcttccgtcactt 54341355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 33419608 - 33419686
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    ||||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||| |||||||||||||||| ||||||    
T  33419608 ttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattgaaataagttagtctcttccg 33419686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 37285879 - 37285809
Alignment:
Q  31 ttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    |||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||    
T  37285879 ttatattttaaaaatttcaagttggttcaaaacgttactcacattgaaataagttagtgcc-tccgtcactt 37285809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 48618559 - 48618616
Alignment:
Q  29 ccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagtta 86  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||  |||||||||    
T  48618559 ccttatgttttaacaatttcaagttggttcaaaacgttactcacattagaataagtta 48618616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 30548064 - 30547992
Alignment:
Q  30 cttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    |||| ||||||| | |||||| ||||| |||||||||||||| |||||||||||||||||| ||| |||||||    
T  30548064 cttacgttttaaaagtttcaagttggtccaaaacgttactcatgttgaaataagttagtccattcagtcactt 30547992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 19540900 - 19540962
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagt 88  Q
    |||| ||||||||||||| ||| || ||||||||||||||||||||| ||  |||||||||||    
T  19540900 gtcctttatgttttaacagttttaaattggttcaaaacgttactcacattagaataagttagt 19540962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 51388103 - 51388033
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagt 88  Q
    |||||||  |||||||  |||||| | ||| || ||||| |||||||||||||||||||||||||||||||    
T  51388103 ttaagttgatcccttacattttaaaagttttaaattggtccaaaacgttactcacgttgaaataagttagt 51388033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 33419878 - 33419802
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    |||||||| ||||||| | ||| || ||||   |||||||||||||||||| ||||| |||||| |||| |||||||    
T  33419878 gtcccttacgttttaaaagttttaagttggactaaaacgttactcacgttggaataaattagtctcttcagtcactt 33419802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 3374 - 3292
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||| ||| ||||||||||||||||| |||||||    
T  3374 aagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataagttagtcccttctgtcactt 3292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 10567533 - 10567607
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||| |||||||| ||||||| | |||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  10567533 aagttggtcccttacgttttaaaagtttcaagttggttcaaaacgttactcacattgaaataagttagtctcttc 10567607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 10567804 - 10567722
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||||| ||||||| | |||||| ||||| |||||| |||||||||||| |||||||||||| ||||||||||||    
T  10567804 aagttggtcccttacgttttaaaagtttcaagttggtccaaaacattactcacgttggaataagttagtctcttccgtcactt 10567722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 32629392 - 32629314
Alignment:
Q  21 agtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtca 99  Q
    |||| ||||||||| |||||| |||||||| || |||||||||||||| ||| ||| |||||||||||| |||||||||    
T  32629392 agttggtcccttatattttaaaaatttcaagttcgttcaaaacgttacccacattgtaataagttagtctcttccgtca 32629314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 6611681 - 6611755
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||| |||||| ||||||||| | |||||| ||||||||||||||| |||   ||| |||||||||||||||||    
T  6611681 aagttggtccctcatgttttaaaagtttcaagttggttcaaaacgttgctctaattggaataagttagtcccttc 6611755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 29675215 - 29675130
Alignment:
Q  18 ttaagtttgtcccttatgttttaaca-atttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| ||| || ||||||||| | |||| || |||||||| ||||||| |||| ||| ||||||||||| |||||||||||||    
T  29675215 ttaagttggtctctcatgttttaaaagattttaagttggttcagaacgttattcacattggaataagttagttccttccgtcactt 29675130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 34829892 - 34829823
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    |||||||| |||||||   |||||| ||||||||||||||||| ||  ||||||||||||||||| ||||    
T  34829892 gtcccttacgttttaaaggtttcaagttggttcaaaacgttacccatattgaaataagttagtcctttcc 34829823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 29674947 - 29675022
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||| |||||||| ||||||| | |||||| ||| | |||||| | |||||||||| ||||| ||||||||||||    
T  29674947 aagttggtcccttaagttttaaaagtttcaagttgatccaaaacatgactcacgttggaataaattagtcccttcc 29675022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 32629131 - 32629198
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagtt 85  Q
    ||||||| ||||||||  ||||||   |||||| || || ||||||||||||||||||||||||||||    
T  32629131 ttaagttggtcccttacattttaaaggtttcaagttagtccaaaacgttactcacgttgaaataagtt 32629198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 28613234 - 28613311
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||||| |||||||| ||||||| | ||  || ||||| ||||||||||||||  ||| |||||||||||| |||||    
T  28613234 ttaagttggtcccttacgttttaaaagttgtaagttggtccaaaacgttactcatattggaataagttagtctcttcc 28613311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 17342973 - 17343025
Alignment:
Q  35 gttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttag 87  Q
    ||||||| | |||||| ||||| ||||||||||||||| || |||||||||||    
T  17342973 gttttaaaagtttcaaattggtccaaaacgttactcaccttaaaataagttag 17343025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 19279068 - 19279104
Alignment:
Q  59 aaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  19279068 aaaacgttactcacgttggaataagttagtccgttcc 19279104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 28705815 - 28705759
Alignment:
Q  29 ccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagtt 85  Q
    ||||||||||||| | |||||| | ||||||||| ||||| ||| ||||||||||||    
T  28705815 ccttatgttttaaaagtttcaaataggttcaaaatgttacccaccttgaaataagtt 28705759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 29526938 - 29526856
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcac 100  Q
    ||||||| |||||||| ||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||| |||| |||||    
T  29526938 ttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagttagtctcttcagtcac 29526856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 44995402 - 44995320
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||||| ||||||| | | |||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  44995402 aagttggtcccttacgttttaaaagtatcaagttggtccaaaacgttactcacgttggaataagttagtctcttccgtcactt 44995320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 3217355 - 3217429
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||| |||| ||||||||||| | |||||| |||||  |||||||||||||||||| |||||||||||||||||    
T  3217355 aagttggtccattatgttttaaaattttcaagttggtctaaaacgttactcacgttggaataagttagtcccttc 3217429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 13490242 - 13490326
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| ||| |||| ||||||| | ||| || ||||| ||||||||||||||||||| ||||||||||||||| | |||||||    
T  13490242 ttaagttggtctcttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataagttagtccctccagtcactt 13490326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 3221169 - 3221089
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcac 100  Q
    ||||| |||| ||||||||||| | |||||| |||||  ||||||||||||| |||| |||||||| |||||||| |||||    
T  3221169 aagttggtccattatgttttaaaattttcaagttggtctaaaacgttactcatgttggaataagtttgtcccttctgtcac 3221089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 43513894 - 43513826
Alignment:
Q  27 tcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||||| |||||||   |||||| ||||||||||| |||| ||||||||||||||||||||| |||||    
T  43513894 tcccttacgttttaatgttttcaagttggttcaaaatgttattcacgttgaaataagttagtcacttcc 43513826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 15988592 - 15988513
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtca 99  Q
    ||||| ||||||||| |||||| | ||| || ||||| |||||| |||||||| ||| |||||||||||||||| |||||    
T  15988592 aagttggtcccttatattttaaaagttttaagttggtccaaaacattactcacattggaataagttagtccctttcgtca 15988513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 27956801 - 27956877
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    |||||||| ||||||| | |||||| ||||| |||||| |||| ||||||| |||||||||||  |||||| |||||    
T  27956801 gtcccttacgttttaaaagtttcaagttggtccaaaacattacccacgttggaataagttagtttcttccgacactt 27956877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 14473847 - 14473796
Alignment:
Q  45 tttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    |||||| ||||| ||||||||||||||  ||| |||||||||||||||||||    
T  14473847 tttcaagttggtccaaaacgttactcattttggaataagttagtcccttccg 14473796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 43971856 - 43971781
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgtt-gaaataagttagtcccttc 94  Q
    ||||| ||||||  |||||||| | |||||  ||||||||||  |||||||||||| |||||||||||||||||||    
T  43971856 aagttggtccctagtgttttaaaagtttcatgttggttcaaattgttactcacgttagaaataagttagtcccttc 43971781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 13525323 - 13525241
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcac 100  Q
    ||||||||||| |||||||||||| || ||||| |||||  ||||||||| |||| ||  ||| ||||| || ||||||||||    
T  13525323 ttaagtttgtctcttatgttttaaaaaattcaagttggtctaaaacgttattcacatttcaattagttaatctcttccgtcac 13525241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 15988052 - 15988125
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||| |||||||||||||||| | || ||| ||||| |||| | |||||||| ||| |||||||||||||||||    
T  15988052 aagttggtcccttatgttttaa-agttccaagttggtccaaatcattactcacattggaataagttagtcccttc 15988125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 14473548 - 14473629
Alignment:
Q  21 agtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    |||| |||||||||||||||| | ||| || || || ||||| |||| |||  ||| |||||||||||||||||| ||||||    
T  14473548 agttggtcccttatgttttaaaagttttaagtttgtccaaaatgttaatcatattggaataagttagtcccttccatcactt 14473629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 24015879 - 24015956
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||||| |||| ||| ||||| | |||||||  ||||| |||||| ||||| || |||||||||||||||| |||||    
T  24015879 ttaagttggtcctttacgttttgaaaatttcatgttggtccaaaacattactgacattgaaataagttagtctcttcc 24015956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 1353176 - 1353100
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttc 94  Q
    ||||||| ||| |||||||||||| | |||||| ||||| ||||| ||||||||  ||  |||||||||||| ||||    
T  1353176 ttaagttggtctcttatgttttaaaagtttcaagttggtccaaaatgttactcatcttagaataagttagtctcttc 1353100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 24284144 - 24284060
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||||| | ||||| |||||| | |||||| |||   |||||| |||||||  || |||||||||||| |||||||||||||    
T  24284144 ttaagtttgactcttatattttaaaagtttcaagttgacccaaaacattactcatcttaaaataagttagttccttccgtcactt 24284060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 26845524 - 26845448
Alignment:
Q  20 aagtttgtcccttatgtttt-aacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||| |||| ||||||||| |||| |||||  ||||||||||||||||||||| ||  || ||||||| |||||||    
T  26845524 aagttggtcctttatgtttttaacagtttcatgttggttcaaaacgttactcacattagaacaagttagccccttcc 26845448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 33992411 - 33992474
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtc 89  Q
    |||||||| ||||||| | |||||| |||||||||||||||| |||||||||||||||||||||    
T  33992411 gtcccttacgttttaaaagtttcaagttggttcaaaacgttattcacgttgaaataagttagtc 33992474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 16643082 - 16642983
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcacttcacttgaccatttaaagatttgg 125  Q
    |||| |||| |||||| | |||||| ||| ||| ||| ||||||||  |||||||||||||||| ||||||||     |||||||| |||||||||||||    
T  16643082 gtcctttatattttaaaagtttcaagttgcttctaaatgttactcagattgaaataagttagtctcttccgtc-----acttgaccgtttaaagatttgg 16642988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 33992669 - 33992605
Alignment:
Q  29 ccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtccctt 93  Q
    ||||| ||||||| | ||| || |||||||||||||||||||| |||| ||||||||| ||||||    
T  33992669 ccttacgttttaaaagttttaaattggttcaaaacgttactcatgttggaataagttaatccctt 33992605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 34439566 - 34439484
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||||| ||||||| | ||| || ||||| ||||||||||||||||||| | |||||||||| ||||||||||||    
T  34439566 aagttggtcccttacgttttaaaagtttaaagttggtccaaaacgttactcacgttggattaagttagtctcttccgtcactt 34439484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 16049548 - 16049623
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtccctt 93  Q
    ||||||| |||||||  ||||||| |||||||| ||||| ||||||||||| ||| ||| ||||||||||||||||    
T  16049548 ttaagttggtccctttcgttttaaaaatttcaagttggtccaaaacgttacccacattggaataagttagtccctt 16049623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 4623137 - 4623215
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    ||||||| ||| |||| |||||||   |||||| ||||| ||||| ||||||||| |||||||||||||||||||||||    
T  4623137 ttaagttggtctcttacgttttaaaggtttcaagttggtccaaaatgttactcacattgaaataagttagtcccttccg 4623215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 25879647 - 25879713
Alignment:
Q  30 cttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    |||| ||||||| | |||||| || |||||||||||||| ||||||| |||||||||||||||||||    
T  25879647 cttacgttttaatagtttcaagttagttcaaaacgttacccacgttggaataagttagtcccttccg 25879713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 34687824 - 34687894
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcc 90  Q
    ||||| |||||||||||||||| | |||||| ||||| ||||||||||||||| ||  |||||||||||||    
T  34687824 aagttggtcccttatgttttaaaagtttcaagttggtccaaaacgttactcactttagaataagttagtcc 34687894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 7535564 - 7535524
Alignment:
Q  52 ttggttcaaaacgttactcacgttgaaataagttagtccct 92  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  7535564 ttggtccaaaacgttactcacgttgaaataagttagtccct 7535524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 18429483 - 18429558
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||| ||||||||| |||||| | |||||| ||||| |||||  |||||||||||  ||||||||||||||||||    
T  18429483 aagttggtcccttatattttaaaagtttcaagttggtccaaaatattactcacgttagaataagttagtcccttcc 18429558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 18935121 - 18935188
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagtt 85  Q
    ||||||| |||||||||||| ||| | |||||| ||||||||||| ||||||||| |||||| |||||    
T  18935121 ttaagttggtcccttatgttataaaagtttcaaattggttcaaaatgttactcaccttgaaacaagtt 18935188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 34439292 - 34439367
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||| |||||||| ||||||| |  ||||| ||||| |||||||||| |||||||| |||||||||||| |||||    
T  34439292 aagttggtcccttacgttttaaaagattcaagttggtccaaaacgttattcacgttgcaataagttagtctcttcc 34439367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 4623414 - 4623333
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| ||| |||||||||||| | |||||| |||||  ||||| ||  |||||||||||||||||||||||||| |||||||    
T  4623414 aagttggtcacttatgttttaaaagtttcaagttggtcaaaaacattt-tcacgttgaaataagttagtcccttcagtcactt 4623333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 23871168 - 23871250
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||| || ||||||   |||||| ||||| ||||| ||||||| |||||||||||||||||| ||||| ||||||    
T  23871168 aagttggtccctcatattttaaaggtttcaagttggtccaaaatgttactcgcgttgaaataagttagtcacttccatcactt 23871250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 25879897 - 25879815
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| ||||||||| |||||| | |||||| ||||||||||| |||||  |  ||| ||||||||||||||||| |||||||    
T  25879897 aagttggtcccttatattttaaaagtttcaagttggttcaaaatgttacatatattggaataagttagtcccttctgtcactt 25879815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 165261 - 165197
Alignment:
Q  29 ccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtccctt 93  Q
    |||||| |||||| | ||| || |||||||||||  ||| |||||||||||||||||||||||||    
T  165261 ccttatcttttaaaagttttaagttggttcaaaatattattcacgttgaaataagttagtccctt 165197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 7644856 - 7644925
Alignment:
Q  27 tcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    ||||||| ||||||| ||||| || ||||| | |||| |||||||  ||| |||||||||||||||||||    
T  7644856 tcccttacgttttaaaaattttaagttggtccgaaacattactcagattggaataagttagtcccttccg 7644925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 18548640 - 18548681
Alignment:
Q  52 ttggttcaaaacgttactcacgttgaaataagttagtccctt 93  Q
    ||||| |||||| ||||||| |||||||||||||||||||||    
T  18548640 ttggtccaaaacattactcaagttgaaataagttagtccctt 18548681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 7535364 - 7535400
Alignment:
Q  52 ttggttcaaaacgttactcacgttgaaataagttagt 88  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  7535364 ttggttcaaaacgttactcacattggaataagttagt 7535400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 7645119 - 7645059
Alignment:
Q  27 tcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttag 87  Q
    |||||||  |||||| | |||||| ||| | ||||||||||||||||||| ||||||||||    
T  7645119 tcccttacattttaaaagtttcaagttgatccaaaacgttactcacgttgcaataagttag 7645059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 7460641 - 7460723
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| |||||||| ||||||| |||||||| ||||| ||||||  ||| ||||||||||||||||||||  |||||||||||    
T  7460641 aagttggtcccttacgttttaaaaatttcaagttggtccaaaacactacccacgttgaaataagttagtcttttccgtcactt 7460723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 24188241 - 24188171
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcc 90  Q
    ||||| |||||||||||||||| | |||||| ||||||||||| ||||||||||| | |||||||||||||    
T  24188241 aagttggtcccttatgttttaagagtttcaagttggttcaaaatgttactcacgtcggaataagttagtcc 24188171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 22566373 - 22566450
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtca 99  Q
    ||||| |||||||| ||||||| | ||||   ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  22566373 aagttggtcccttacgttttaaaagtttcg--ttggtccaaaacgttactcacgttgaaataaattagtcccttccgtca 22566450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 36469879 - 36469795
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| |||||||| ||||||| | |||||| ||||| ||||| ||||||||||||| |||||||||||| || || ||||||    
T  36469879 ttaagttggtcccttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataagttagtctctcccatcactt 36469795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 7460913 - 7460844
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtc 89  Q
    ||||| ||| |||||||||||| | |||||| |||||  |||||||||||||||||| ||||||||||||    
T  7460913 aagttggtcacttatgttttaaaagtttcaaattggtctaaaacgttactcacgttggaataagttagtc 7460844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 24185748 - 24185820
Alignment:
Q  30 cttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||||||||   |||||| ||||| ||||   ||||||||||||||||||||||||||||||||| ||||    
T  24185748 cttatgttttaaaggtttcaagttggtccaaatatttactcacgttgaaataagttagtcccttccgttactt 24185820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 34536028 - 34535944
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| ||| |||| ||||||  | |||||| ||| |  |||||||||||||||||| ||||||||||||||||| |||||||    
T  34536028 ttaagttggtctcttacgttttagaagtttcaagttgatcaaaaacgttactcacgttggaataagttagtcccttcggtcactt 34535944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 34535767 - 34535837
Alignment:
Q  26 gtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    |||||||| ||||||| | ||| || ||||| ||||||||||||||  ||| |||||||||||||||||||    
T  34535767 gtcccttacgttttaaaagttttaagttggtccaaaacgttactcatattggaataagttagtcccttccg 34535837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 6376434 - 6376518
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||||| |||||||| ||||||| | |||||| ||| ||||||||||| ||||| ||  |||||||||||| |||  |||||||    
T  6376434 ttaagttggtcccttaggttttaaaagtttcaagttgattcaaaacgtttctcacatttgaataagttagtctcttttgtcactt 6376518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 7150258 - 7150186
Alignment:
Q  17 attaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtc 89  Q
    ||||||||||||||||||| ||| | ||||| || || || ||||||| ||||||||||  ||||||||||||    
T  7150258 attaagtttgtcccttatgctttgataattttaagttcgtccaaaacggtactcacgttttaataagttagtc 7150186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 8560697 - 8560772
Alignment:
Q  18 ttaagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtccctt 93  Q
    ||||||| ||||| ||  |||||| | |||||  ||||| ||||||||||||||| ||| ||||||||||||||||    
T  8560697 ttaagttggtcccctacattttaaaagtttcatgttggtccaaaacgttactcacattgtaataagttagtccctt 8560772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 6376664 - 6376626
Alignment:
Q  58 caaaacgttactcacgttgaaataagttagtcccttccg 96  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  6376664 caaaacgttattcacgttaaaataagttagtcccttccg 6376626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 38978370 - 38978434
Alignment:
Q  31 ttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||||||||| ||||| || |||||| ||||| ||||||||  | ||||||||||||| |||||    
T  38978370 ttatgttttaaaaattttaaattggtttaaaacattactcacaataaaataagttagtctcttcc 38978434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 63066 - 62984
Alignment:
Q  20 aagtttgtcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttccgtcactt 102  Q
    ||||| ||||||||  |||||| | |||||  ||||| ||||||||||||||| ||| |||||||||||| ||||||||||||    
T  63066 aagttggtcccttacattttaaaagtttcaggttggtccaaaacgttactcactttggaataagttagtctcttccgtcactt 62984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 62803 - 62871
Alignment:
Q  27 tcccttatgttttaacaatttcaacttggttcaaaacgttactcacgttgaaataagttagtcccttcc 95  Q
    ||||||| ||||||| | ||| || ||||| ||||||||||||||||||| |||||||||||| |||||    
T  62803 tcccttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataagttagtctcttcc 62871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1484 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1484
Description:

Target: scaffold1484; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 226 - 171
Alignment:
Q  185 gactgataaatttcaagaaaaagcaagctcattaataacaaacaagtgcatatgca 240  Q
    ||||| |||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  226 gactggtaaaattcaagacaaagcaaattcattaataataaacaagtgcatatgca 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University