View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15738_high_5 (Length: 363)
Name: NF15738_high_5
Description: NF15738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15738_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 34667851 - 34667501
Alignment:
| Q |
1 |
aatacctaactttatcaaattaatttttgtgaaaattagaggtttttcgaaacatgaaagtaaacaataaattagtgaacaatggtcagagtggaaatag |
100 |
Q |
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| T |
34667851 |
aatacctaactttatcaaattaatttttgtgaaaattagaggtttttagaaacatgaaactaaacaataaattagtgaacaatggtcagagtggaaatag |
34667752 |
T |
|
| Q |
101 |
acttggatctcttaagcaaggtctcagatacaagtcttgtagacgggaaaaaatgtggttggtagaagagactctgctaatggttaccggtgagattttc |
200 |
Q |
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| T |
34667751 |
acttggatctcttaagcaaggtctcagatacgagtcttgtagacgggaaaaaatgtggttggtagaagagactctgctaatggttaccggtgagattttc |
34667652 |
T |
|
| Q |
201 |
ggacggaaattagtacaaagctacttcacaccaattatatagttac---nnnnnnnnnnnnnncaacatattacccttcacccaacaaatgcacttgtgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
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| T |
34667651 |
ggacggaaattagtacaaagctacttcacaccaattatatagttacaaaaattaaaaaaaattaaaattattacccttcacccagcaaatgcacttgtgg |
34667552 |
T |
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| Q |
298 |
aactagttttgtaatctcttctcccaattgctcttcatagtatgttgcttc |
348 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34667551 |
aactatttttgtaatctcttctcccaattgctcttcatagtatgtttcttc |
34667501 |
T |
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