View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15738_low_3 (Length: 481)
Name: NF15738_low_3
Description: NF15738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15738_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 43051628 - 43051176
Alignment:
| Q |
18 |
aatatgtgcacctcctaatcaaaatctaatcttcaaatacgcaatgaatgaccaagaatagtttcatgtgggaatgtaatgatgaatatacctgagggaa |
117 |
Q |
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| T |
43051628 |
aatatgtgcacctcctaatcaaaatctaatcttcaaatacgcaatgaatgaccaagaatagtttcatgtgggaatgtaatgatgaatatacctgagggaa |
43051529 |
T |
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| Q |
118 |
ggaagagctctgagcccaaacagagccatcatggccaatgatggcagcggcagataggtgatgtccggtgccatcaatatcacacatcaaatgttcatca |
217 |
Q |
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| T |
43051528 |
ggaagagctctgagcccaaacagagccatcatggccaatgatggcagcggcagataggtggtgtccggtgccatcaatatcacacatcaaatgttcatca |
43051429 |
T |
|
| Q |
218 |
acgtaagtttgccacgacattttgtccttcaaaatttgttccttttttcttcttgttgtttagtgttgttgtaatgtaatg-----tgattgtgaccttc |
312 |
Q |
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| T |
43051428 |
acgtaagtttgccacgacattttgtccttcaaaatttgttccttttttcttcttgttgtgtagtgttgttgtaatgtaatgtaatatgattgtgaccttc |
43051329 |
T |
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| Q |
313 |
aaatattgtttttaaataagggttggaatggaattggatgatgggtgagtgatgatgcacgctttacctccattcaattgttgccactcatttaccttct |
412 |
Q |
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| T |
43051328 |
aaatattgtttttaaataagggttggaatggaattggatgatgggtgagtgatgatgcacgctttacctccattcaattgttgccactcatttaccttct |
43051229 |
T |
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| Q |
413 |
ccttcattttaggactcaactaactactctctctatttactattcctattctt |
465 |
Q |
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| T |
43051228 |
ccttcattttaggactcaactaactactctctctatttactattcctattctt |
43051176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 34173838 - 34173974
Alignment:
| Q |
106 |
tacctgagggaaggaagagctctgagcccaaacagagccatcatggccaatgatggcagcggcagataggtgatgtccggtgccatcaatatcacacatc |
205 |
Q |
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|||||||||||| |||| |||||||||||||||||| || |||||||| | |||||||| || | |||||||| || |||||||| |||||||||||| |
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| T |
34173838 |
tacctgagggaatgaagtgctctgagcccaaacagaaccgtcatggccgagaatggcagccgcggtgaggtgatgaccagtgccatcgatatcacacatc |
34173937 |
T |
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| Q |
206 |
aaatgttcatcaacgtaagtttgccacgacattttgt |
242 |
Q |
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| T |
34173938 |
aaatgttcatccacataagtttgccacgacattttgt |
34173974 |
T |
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