View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15738_low_6 (Length: 366)

Name: NF15738_low_6
Description: NF15738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15738_low_6
NF15738_low_6
[»] chr7 (19 HSPs)
chr7 (17-355)||(4783937-4784275)
chr7 (17-355)||(4816366-4816704)
chr7 (37-267)||(4863662-4863895)
chr7 (37-245)||(4630692-4630900)
chr7 (40-242)||(4636631-4636827)
chr7 (37-160)||(4672526-4672649)
chr7 (40-160)||(4643521-4643641)
chr7 (70-168)||(4666777-4666875)
chr7 (70-265)||(4697345-4697543)
chr7 (71-168)||(4846171-4846268)
chr7 (71-158)||(4653372-4653459)
chr7 (71-246)||(4712231-4712406)
chr7 (191-243)||(4672443-4672495)
chr7 (202-242)||(4643454-4643494)
chr7 (106-165)||(4647378-4647437)
chr7 (202-245)||(4846299-4846342)
chr7 (40-102)||(4662899-4662961)
chr7 (205-242)||(4666703-4666740)
chr7 (120-172)||(4661636-4661688)
[»] chr4 (1 HSPs)
chr4 (52-242)||(18925879-18926069)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 4783937 - 4784275
Alignment:
Q  17 atagtttggctgaacatgctgctgatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcgg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4783937 atagtttggctgaacatgctgctgatgtgataaggtggagtggtgctcctttggttcctgttcataaggattatgccgtgactatgggttctcaaggcgg 4784036  T
Q  117 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||    
T  4784037 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaacctatgcctacggtatatcgtgatgtcacgttgaatggaattgag 4784136  T
Q  217 attttgaaaataagtgataaaaataatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaaga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784137 attttgaaaataagtgataaaaataatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaaga 4784236  T
Q  317 aatcaacnnnnnnnntccttgctgtggttgctgtttcat 355  Q
    |||||||        ||||||||||||||||||||||||    
T  4784237 aatcaacaacaaaaatccttgctgtggttgctgtttcat 4784275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 4816366 - 4816704
Alignment:
Q  17 atagtttggctgaacatgctgctgatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcgg 116  Q
    ||||||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4816366 atagtttggctgaactttttgctgatgtgatatggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcatggcgg 4816465  T
Q  117 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgag 216  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||    
T  4816466 aagctctcaaattgaaaaagttaatctttcgatcaagctacatcgattaccaaaacctatgccttcggtatatcgtgatgtcacgttgaatggaattgag 4816565  T
Q  217 attttgaaaataagtgataaaaataatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaaga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816566 attttgaaaataagtgataaaaataatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaaga 4816665  T
Q  317 aatcaacnnnnnnnntccttgctgtggttgctgtttcat 355  Q
    |||||||        ||||||||||||||||||||||||    
T  4816666 aatcaacaacaaaaatccttgctgtggttgctgtttcat 4816704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 37 - 267
Target Start/End: Complemental strand, 4863895 - 4863662
Alignment:
Q  37 gctgatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaag 136  Q
    |||||||||||| ||||||| ||| ||| | | ||||||||||||||||||||| | ||| ||||    ||| |||  ||||||||||||||||||| ||    
T  4863895 gctgatgtgatacggtggagcggttctcgtatggttcctgttcataaggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagag 4863796  T
Q  137 ttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataa 236  Q
    |||| |||||| ||||| |||||| |||||||||  | |||  |||    || |||||||| ||||||||||||||||||||||| |||||||| |||||    
T  4863795 ttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataa 4863696  T
Q  237 aaa---taatctctttggagtgaatccaaaaccc 267  Q
    |||   |||| |||||||| ||||||||||||||    
T  4863695 aaataataatttctttggactgaatccaaaaccc 4863662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 4630900 - 4630692
Alignment:
Q  37 gctgatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaag 136  Q
    |||||||||||||||||||||||||||| | | ||||||  ||||||||||||||  |||  ||||   |||||||  ||||||||||||||||||| ||    
T  4630900 gctgatgtgataaggtggagtggtgctcgtatggttcctactcataaggattatgttgtgcttatgtactctcaagaaggaagctctcaaattgaaagag 4630801  T
Q  137 ttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataa 236  Q
    |||||||||| |||||||| | ||||  |||| || |||| |  ||  | ||||||||||||  | |||||||||| |||||||| ||||||||||||||    
T  4630800 ttaatctttcaatcaagcttcgacgagcaccagaaactatacacacaatatatcgtgatgtcctgctgaatggaattgagattttcaaaataagtgataa 4630701  T
Q  237 aaataatct 245  Q
    || ||||||    
T  4630700 aactaatct 4630692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 242
Target Start/End: Complemental strand, 4636827 - 4636631
Alignment:
Q  40 gatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagtta 139  Q
    ||||||||| ||||||||||||||| | | ||||||||||||||||||||||  ||  ||||||      | ||   || |||||||||||||| ||||     
T  4636827 gatgtgatagggtggagtggtgctcgtatggttcctgttcataaggattatgttgtttctatgg------agggattaatctctcaaattgaaagagttt 4636734  T
Q  140 atctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaa 239  Q
    ||||||| |||||||| |||||||||||| || | |||||||| || ||||||||||| |   | ||||||||||||||||| ||||| ||||||||| |    
T  4636733 atctttcaatcaagcttcaacgattaccacaacccatgcctacagtatatcgtgatgttattcttaatggaatcgagattttcaaaattagtgataaata 4636634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 4672649 - 4672526
Alignment:
Q  37 gctgatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaag 136  Q
    |||||||| ||||| ||||||||||||| | | ||||||||||||||||||||||| || ||||||   |||||||  ||||||||||||||||||| ||    
T  4672649 gctgatgttataagttggagtggtgctcgtatggttcctgttcataaggattatgctgtcactatgtactctcaagaaggaagctctcaaattgaaagag 4672550  T
Q  137 ttaatctttcgatcaagctacaac 160  Q
    |||||||||| || ||||| ||||    
T  4672549 ttaatctttctattaagcttcaac 4672526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 4643641 - 4643521
Alignment:
Q  40 gatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagtta 139  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||  || ||||||  | |||||  |||||||||||| |||||| || ||    
T  4643641 gatgtgatagggtggagtggtgctcgtttggttcctgttcataaggattatgcaatgtctatggactatcaagaaggaagctctcaacttgaaagagcta 4643542  T
Q  140 atctttcgatcaagctacaac 160  Q
    ||||||| |||||||| ||||    
T  4643541 atctttcaatcaagcttcaac 4643521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 4666875 - 4666777
Alignment:
Q  70 gttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattacca 168  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| || |||  ||||||||||| |||||||||||| || ||||| |||||| |||||    
T  4666875 gttcctgttcataaggattatgccttgactatggattctcaaggagggagccgtcaaattgaaagagttaatctttcaattaagcttcaacgagtacca 4666777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 265
Target Start/End: Original strand, 4697345 - 4697543
Alignment:
Q  70 gttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaa 169  Q
    |||||||||||||| |||||||| ||| |||||   |||||||  ||||||||||||||||||| | |||||||||| |||||||||||||||  ||||     
T  4697345 gttcctgttcataaagattatgctgtgtctatgcactctcaagaaggaagctctcaaattgaaagacttaatctttcaatcaagctacaacgagcaccag 4697444  T
Q  170 aatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaa---ataatctctttggagtgaatccaaaac 265  Q
     |  |||    ||    ||  |||||||||| |||||||| ||||||||||||||||||| ||||||||   ||||||||||||||   ||||||||||    
T  4697445 gacgtatcttcacaagatacggtgatgtcacattgaatggcatcgagattttgaaaataaatgataaaaatgataatctctttggatcaaatccaaaac 4697543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 4846171 - 4846268
Alignment:
Q  71 ttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattacca 168  Q
    |||||||||||||||||||||| ||||  ||    ||||||   ||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||    
T  4846171 ttcctgttcataaggattatgctgtgaaaatctactctcaaaatggaagctctgaaattgaaagagttaatctttcaatcaagcttcaacgattacca 4846268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 4653459 - 4653372
Alignment:
Q  71 ttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctaca 158  Q
    |||||||||||||||||||||  |||||||||   ||| |||  |||||| |||||||||||| |||||||||| | |||||||||||    
T  4653459 ttcctgttcataaggattatgttgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatcttacaatcaagctaca 4653372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 4712231 - 4712406
Alignment:
Q  71 ttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaa 170  Q
    |||||||||||||||||||||| ||||  |||   ||||||   ||||||||| ||||||||| |||||| ||||| || ||||| ||||||  |||| |    
T  4712231 ttcctgttcataaggattatgctgtgaaaatgtactctcaaaatggaagctctgaaattgaaagagttaacctttcaattaagcttcaacgagaaccaga 4712330  T
Q  171 atctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataatctc 246  Q
    |  |||    ||    || ||||||||||   |||||||||| |||||||| ||||||||||||||||||||||||    
T  4712331 aagtatctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctc 4712406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 4672495 - 4672443
Alignment:
Q  191 gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataat 243  Q
    |||||||||| || ||||||||||||||||| ||| |||||||||||||||||    
T  4672495 gtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataat 4672443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 4643494 - 4643454
Alignment:
Q  202 ttgaatggaatcgagattttgaaaataagtgataaaaataa 242  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  4643494 ttgaatggaatcgagattttaaaaataagtgacaaaaataa 4643454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 4647437 - 4647378
Alignment:
Q  106 tctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgatta 165  Q
    |||||||| |||||   ||||||||||| |||||||||||| |||||||| |||||||||    
T  4647437 tctcaaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaacgatta 4647378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 4846299 - 4846342
Alignment:
Q  202 ttgaatggaatcgagattttgaaaataagtgataaaaataatct 245  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||    
T  4846299 ttgaatggaatcgagattttcaaagtaagtgataaaaacaatct 4846342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 4662961 - 4662899
Alignment:
Q  40 gatgtgataaggtggagtggtgctccttttgttcctgttcataaggattatgccgtgactatg 102  Q
    ||||||||||||||||||  || || | | ||||||||||||||||||||||  |||||||||    
T  4662961 gatgtgataaggtggagtaatggtcgtatggttcctgttcataaggattatggtgtgactatg 4662899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 4666740 - 4666703
Alignment:
Q  205 aatggaatcgagattttgaaaataagtgataaaaataa 242  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  4666740 aatggaatcgagattttaaaaataagtgacaaaaataa 4666703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 4661688 - 4661636
Alignment:
Q  120 ctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaat 172  Q
    |||||||||||||| |||| ||||||| |||||||| |||| |||| ||||||    
T  4661688 ctctcaaattgaaagagttgatctttcaatcaagcttcaaccattatcaaaat 4661636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 242
Target Start/End: Original strand, 18925879 - 18926069
Alignment:
Q  52 tggagtggtgctccttttgttcctgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatca 151  Q
    ||||||||||||| | | ||||||||||||||||||||||  |||||||||   |||| ||  |||||||| |||||| ||| |||||||||||| || |    
T  18925879 tggagtggtgctcgtatggttcctgttcataaggattatgttgtgactatgtactctcgagaaggaagctcgcaaattaaaagagttaatctttcaataa 18925978  T
Q  152 agctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataa 242  Q
    |||||||||||  |||| ||  |||     |    || ||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  18925979 agctacaacgagcaccagaaaatatctactcaaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataa 18926069  T

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