View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15738_low_9 (Length: 349)
Name: NF15738_low_9
Description: NF15738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15738_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 56 - 315
Target Start/End: Complemental strand, 54456645 - 54456386
Alignment:
| Q |
56 |
ggattttcagattgaattacttggaagagatcgatcagggatatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
155 |
Q |
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| T |
54456645 |
ggattttcagattgaattacttggaagagatcggtcagggagatatgtgacggtgggatgagaaggctgcatggttgatggattgatgttatcgatagca |
54456546 |
T |
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| Q |
156 |
cgaaatttgaactccattgaacaaacacttgaaactataaataaatattcagagaaacaaaactggtattaattaatgagtgctaataacgttgttgaat |
255 |
Q |
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| T |
54456545 |
cggaatttgaactccattgaacaaaaacttgaaactataaataaatattcagagaaacaaaactggtattaattaatgagtgctaataacgttgttgaat |
54456446 |
T |
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| Q |
256 |
tgaaaaaagctaaaaacataacatagagaagaatgttgtttgatgggggatgaaacttac |
315 |
Q |
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| T |
54456445 |
tgaaaaaagctaaaaacataacatagagaagaatgttgtttgatgggggatgaaacttac |
54456386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 54056330 - 54056188
Alignment:
| Q |
56 |
ggattttcagattgaattacttggaagagatcgatcagggatatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
155 |
Q |
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| T |
54056330 |
ggattttcctattgaattacttggaagagatcgatcagggagatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
54056231 |
T |
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| Q |
156 |
cgaaatttgaactccattgaacaaacacttgaaactataaata |
198 |
Q |
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| T |
54056230 |
cgaaatttgaactccattgaacaaacacttgaaactgtaaata |
54056188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 52322202 - 52322251
Alignment:
| Q |
127 |
tggttgatggattgatgttgtcgatagcacgaaatttgaactccattgaa |
176 |
Q |
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| T |
52322202 |
tggttgatggattgatgttgtcgatagcacgatatttgaactccattgaa |
52322251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 15043438 - 15043479
Alignment:
| Q |
153 |
gcacgaaatttgaactccattgaacaaacacttgaaactata |
194 |
Q |
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| T |
15043438 |
gcacgaaatttgaactccattgaagaaatacttgaaactata |
15043479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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