View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15739_high_4 (Length: 226)
Name: NF15739_high_4
Description: NF15739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15739_high_4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 49581874 - 49581662
Alignment:
| Q |
10 |
atgaaactaaaaaacacaaacaacagatttttacactaatgatttacaataattcgagttattttgtatgaaaatatatattagagtacattaaaagtgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49581874 |
atgaaactaaaaaacacaaacaacagatttttacactaatgatttacaataattcgagttattttgtatgaaaatatatattagagtacattaaaagtgt |
49581775 |
T |
|
| Q |
110 |
acgacaagcaaagcacgagagaaaataaaatgaattnnnnnnnnnnnnnnntagtgttagttagttacctccatggaagcagaagaaggagaagaagacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49581774 |
acgacaagcaaagcacgagagaaaataaaatgaatt----taaaaaaaaaatagtgttagttagttacctccatggaagcagaagaaggagaagaagacc |
49581679 |
T |
|
| Q |
210 |
cacgggagacccgcatg |
226 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
49581678 |
caggggagacccgcatg |
49581662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University