View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15739_low_1 (Length: 446)
Name: NF15739_low_1
Description: NF15739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15739_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 106 - 432
Target Start/End: Original strand, 26407920 - 26408255
Alignment:
| Q |
106 |
tatagacactcgattatagaagtagattgaaagctagtcgtggatggcatggcaggtacataaagacataggt-----tggaatttaaagctttaataca |
200 |
Q |
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| T |
26407920 |
tatagacactcgataatagaagtagattgaaagctagtcgtggatggcatggcaggtacataaagacataggtcggaattgaatttaaagctttaataca |
26408019 |
T |
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| Q |
201 |
tgcttataaacctattatgtaatc-ttcccaaac----tataggatacgttttattacgaggcaaacctaaaatgtagctcacttactagtttgagcggc |
295 |
Q |
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| T |
26408020 |
tgcttataaacctattatataatctttcccaaactatatataggatacgttttattatgagacaaaccaaaaatgtagctcatttactagtttgagcggc |
26408119 |
T |
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| Q |
296 |
attgtcatatgttagtcgctaagtgtttgattatatttcatcctatattatgattactttgttaaataaattgagttaattttgtgaccatnnnnnnngt |
395 |
Q |
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| T |
26408120 |
attgtcatatgttagtcgttaagtgtttgattatatttcatcctatattatgattactttgataaataaattgagttaattttgtgacca-gaaaaaagt |
26408218 |
T |
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| Q |
396 |
attttatccctcttctgtcaacaaaaaagtattttat |
432 |
Q |
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| T |
26408219 |
attttattcctcttatatcaacaaaaaagtattttat |
26408255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 26407865 - 26407923
Alignment:
| Q |
24 |
acttcagaagcatggggttgaaacaaccgctgctttggtttatgtgtttgggttatata |
82 |
Q |
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| T |
26407865 |
acttcagaagcatggggttgaaacaaccgctgctttggtttatgtgtttgggttatata |
26407923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 52010955 - 52011042
Alignment:
| Q |
270 |
gtagctcacttactagtttgagcggcattgtcatatgttagtcgctaagtgtttgattatatttcatcctatattatgattactttgt |
357 |
Q |
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| T |
52010955 |
gtagctcacttactagctcgagcggcattatcatatcctagtcgttaagtatttgattatattttatcctgtattataactactttgt |
52011042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 763120 - 763006
Alignment:
| Q |
267 |
aatgtagctcacttactagtttgagcggcattgtcatatgttagtcgctaagtgtttgattatatttcatcctatattatgattactttgttaaataaat |
366 |
Q |
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| T |
763120 |
aatgttgctaacttactagctcgagggacattgtcatatgctagttgctaagtgtttgattatattttgtcatgtattttgaccactttgataaatgaaa |
763021 |
T |
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| Q |
367 |
tgagttaattttgtg |
381 |
Q |
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| T |
763020 |
tgagttatttttgtg |
763006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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