View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15739_low_4 (Length: 248)
Name: NF15739_low_4
Description: NF15739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15739_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 46797689 - 46797910
Alignment:
| Q |
20 |
tgtaaaaggtaggtgagaggctgtaatagctgcttacctgtctcctctgtataaaactcaaccgcaaatataccaactcagtcagaaaaaattgcatttt |
119 |
Q |
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| T |
46797689 |
tgtaaaaggtaggtgagaggctgtaatagctgcttacctgtctcctctgtataaaactcaaccgcaaatataccaactcagtcagaaaaaattgcatttt |
46797788 |
T |
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| Q |
120 |
catttttctgaaaaggctgaaattatagtacaaattggtaatacaaacttcaaactcggtgttctttttgaatgcgcgcccacataacttcatttcaatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46797789 |
catttttctgaaaaggctgaaattatagtacaaattggtaatacaaacttcaaactcggtgttctttttgaatgcgcgcccacataacttcatttcaatc |
46797888 |
T |
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| Q |
220 |
ccgaaaaaagctctttcttctc |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
46797889 |
ccgaaaaaagctctttcttctc |
46797910 |
T |
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