View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15739_low_5 (Length: 226)
Name: NF15739_low_5
Description: NF15739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15739_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 49581874 - 49581662
Alignment:
| Q |
10 |
atgaaactaaaaaacacaaacaacagatttttacactaatgatttacaataattcgagttattttgtatgaaaatatatattagagtacattaaaagtgt |
109 |
Q |
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| T |
49581874 |
atgaaactaaaaaacacaaacaacagatttttacactaatgatttacaataattcgagttattttgtatgaaaatatatattagagtacattaaaagtgt |
49581775 |
T |
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| Q |
110 |
acgacaagcaaagcacgagagaaaataaaatgaattnnnnnnnnnnnnnnntagtgttagttagttacctccatggaagcagaagaaggagaagaagacc |
209 |
Q |
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| T |
49581774 |
acgacaagcaaagcacgagagaaaataaaatgaatt----taaaaaaaaaatagtgttagttagttacctccatggaagcagaagaaggagaagaagacc |
49581679 |
T |
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| Q |
210 |
cacgggagacccgcatg |
226 |
Q |
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| T |
49581678 |
caggggagacccgcatg |
49581662 |
T |
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