View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1573_high_17 (Length: 240)
Name: NF1573_high_17
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 10738119 - 10737977
Alignment:
| Q |
18 |
gcttcacaattacatatatgttcgttcggtcacaagttagttggcacaattttccattgataaaaataaaagaatcgagataaacatccatttaaatatt |
117 |
Q |
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| T |
10738119 |
gcttcacagttacatatatgttcgttcggtcacaagttagttggcacaattttccattgataaaaataaaagaatcaagataaacatccatttaaatatt |
10738020 |
T |
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| Q |
118 |
atctttacaattaaattatgcaaaatttgtacgatttatatta |
160 |
Q |
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| T |
10738019 |
atctttacaattaaattatgcaaaatttgtacgatctatatta |
10737977 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 10737702 - 10737632
Alignment:
| Q |
159 |
tatcatttaacatcatagactcatcctcgtcctcatccactccctctctaaatgatggtcaaataagcaagtaagat |
235 |
Q |
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| T |
10737702 |
tatcatttaacatcatagactcatcgtc------atccactccctctctaaatgatggtcaaataagcaagtaagat |
10737632 |
T |
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