View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1573_high_18 (Length: 228)
Name: NF1573_high_18
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 51910960 - 51910758
Alignment:
| Q |
9 |
agtgagatgaagcatattacaggaccaattccttccagtttctcaaatttaacctacctcacacatcttgttcttgatgataattcacttggagggtgca |
108 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51910960 |
agtgggatgaagcatattacaggaccaattccttctagtttctcaaatttaacctacctcacacatcttgttcttgatgataattcacttggagggtgca |
51910861 |
T |
|
| Q |
109 |
tgcctccaagcttagatcgtttgtccttacttcaaacaatttcaatgagtggtaaccatctgaaaggacagatccctccaacaatagggaatctgaaaaa |
208 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51910860 |
tgcctccaagcttaggtcgtttgtccttacttcaaacaatttcattgagtggtaaccatctgaaaggacagatccctccaacaatagggaatctgaaaaa |
51910761 |
T |
|
| Q |
209 |
cct |
211 |
Q |
| |
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||| |
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| T |
51910760 |
cct |
51910758 |
T |
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