View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1573_high_20 (Length: 226)
Name: NF1573_high_20
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_high_20 |
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| [»] scaffold0458 (2 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: scaffold0458 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 12559 - 12778
Alignment:
| Q |
7 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12559 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
12658 |
T |
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| Q |
107 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12659 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
12758 |
T |
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| Q |
207 |
tggacatatctgctccactt |
226 |
Q |
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|||||||||||||||||||| |
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| T |
12759 |
tggacatatctgctccactt |
12778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 2664 - 2737
Alignment:
| Q |
155 |
gaatgtgtatacaatgtgtcc-tgata-cccttcaaagctacaactatagaaggtggacatatctgctccactt |
226 |
Q |
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||||| |||||||||| |||| ||||| |||||||||| ||| | ||||| ||||||||||||||||||||||| |
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| T |
2664 |
gaatgggtatacaatgggtccctgataacccttcaaaggtaccagtataggaggtggacatatctgctccactt |
2737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 24061024 - 24061243
Alignment:
| Q |
7 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24061024 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
24061123 |
T |
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| Q |
107 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24061124 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
24061223 |
T |
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| Q |
207 |
tggacatatctgctccactt |
226 |
Q |
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|||||||||||||||||||| |
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| T |
24061224 |
tggacatatctgctccactt |
24061243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 39451103 - 39450884
Alignment:
| Q |
7 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39451103 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
39451004 |
T |
|
| Q |
107 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39451003 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
39450904 |
T |
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| Q |
207 |
tggacatatctgctccactt |
226 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39450903 |
tggacatatctgctccactt |
39450884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 39460490 - 39460271
Alignment:
| Q |
7 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39460490 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
39460391 |
T |
|
| Q |
107 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39460390 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
39460291 |
T |
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| Q |
207 |
tggacatatctgctccactt |
226 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39460290 |
tggacatatctgctccactt |
39460271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 39471975 - 39471756
Alignment:
| Q |
7 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471975 |
agttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatg |
39471876 |
T |
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| Q |
107 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471875 |
aagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaagg |
39471776 |
T |
|
| Q |
207 |
tggacatatctgctccactt |
226 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39471775 |
tggacatatctgctccactt |
39471756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 745222 - 745266
Alignment:
| Q |
61 |
ataaatgttacaattttgcaaaacaactgcaccatttccaaatat |
105 |
Q |
| |
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|||||||||||| ||||| ||||| |||||| ||||||||||||| |
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| T |
745222 |
ataaatgttacatttttgaaaaactactgcagcatttccaaatat |
745266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 44488555 - 44488767
Alignment:
| Q |
14 |
ccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaa |
113 |
Q |
| |
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|||||||| ||||||| ||||||||||||| || ||||| |||||||| || || || ||||||||||||||||| | ||||||||||| || || | |
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| T |
44488555 |
ccttgagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcgtttccaaatataaaatcta |
44488654 |
T |
|
| Q |
114 |
ctgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacat |
213 |
Q |
| |
|
|||||| || || ||||||||| |||||| |||||||| ||||||| ||| | ||||| || |||||||||||||| |||| |||||| ||||||| |
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| T |
44488655 |
ttgttccataaatgtcgcattctttataaaattgccttagtgaatgtgcatagagagtgtcttggtacccttcaaagctgcaacgatagaaactggacat |
44488754 |
T |
|
| Q |
214 |
atctgctccactt |
226 |
Q |
| |
|
|||||| |||||| |
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|
| T |
44488755 |
atctgccccactt |
44488767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 44474399 - 44474589
Alignment:
| Q |
32 |
ttgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgttccgtatatatcgc |
131 |
Q |
| |
|
|||||||||||||| ||||| || ||||| ||||| ||| ||| |||||||| ||| |||||||||||||||||||||||||||| || || || | |
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| T |
44474399 |
ttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaaaacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcac |
44474498 |
T |
|
| Q |
132 |
attctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatctgctcc |
222 |
Q |
| |
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|||| |||||||| ||||| | |||||||| ||||| || || ||||| ||||| ||||| || || ||||||||||||| ||| ||||| |
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| T |
44474499 |
attcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatagccttcgaagctgcagctgtagaaggtggacaaatcagctcc |
44474589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 44463805 - 44463977
Alignment:
| Q |
14 |
ccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaa |
113 |
Q |
| |
|
||||| || ||||| | ||||||||||||||| | ||||| || ||||| | |||||||||||| |||||||| | ||||||| |||||||| || | |
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| T |
44463805 |
ccttgtgcagtgattgcattgaattgtccactcattggaagacgtggatagaggttacaattttggaaaacaaccttagcatttccgaatatgaaatcta |
44463904 |
T |
|
| Q |
114 |
ctgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttc |
186 |
Q |
| |
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||||||| || || || ||||||| || || || ||||| |||||||| || || ||||| || |||||||| |
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| T |
44463905 |
ctgttccataaatgtcacattctctgtagaattgtcttagtgaatgtgtgtataacgtgtcttggtacccttc |
44463977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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