View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1573_high_6 (Length: 368)
Name: NF1573_high_6
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_high_6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 51911648 - 51911287
Alignment:
| Q |
9 |
catcatcataaaatttctaacaagctttgtttttcctatgtaactataaataagagattgcatacatcacaatcttgcatgcagagatttctaacagaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51911648 |
catcatcataaaatttctaacaagctttgtttttcctatgtaactataaataagagattgcatacatcacaatcttgcatgcagagatttctaacagaat |
51911549 |
T |
|
| Q |
109 |
tataattttgaaacaacacacttcatcattatatcttaccttgctgtctacgtgaaacattggaataaatcaatgtcggattggtactttttctacactt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51911548 |
tataattttgaaacaacacacttcatcattatatcttaccttgctgtctacgtgaaacattggaataaatcaatgtcggattggtactttttctacactt |
51911449 |
T |
|
| Q |
209 |
tttctttactagtaaattatttacttcatc--nnnnnnnnnncctgtcagattttcttttactaactcaaagtttctcttgtcagatcccaacttcagag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51911448 |
tttctttactagtaaattatttacttcatctttttttttttttctgtcagattttcttttactaactcaaagtttctcttgtcagatcccaacttcagag |
51911349 |
T |
|
| Q |
307 |
aaaaaacttaattgatcaagaaccacctttcaaaatgcaatttttcacatgggttttcaacc |
368 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51911348 |
aaaaaacttaattgatcaagacccacctttcaaaatgcaatttttcacatgggtattcaacc |
51911287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University