View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1573_low_10 (Length: 347)

Name: NF1573_low_10
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1573_low_10
NF1573_low_10
[»] chr6 (14 HSPs)
chr6 (19-339)||(10578891-10579210)
chr6 (86-339)||(6596094-6596347)
chr6 (219-267)||(6423921-6423969)
chr6 (217-267)||(6395553-6395603)
chr6 (105-148)||(6423989-6424032)
chr6 (217-267)||(6410711-6410761)
chr6 (309-339)||(6436852-6436882)
chr6 (217-267)||(19633116-19633166)
chr6 (228-265)||(7132323-7132360)
chr6 (228-265)||(7135246-7135283)
chr6 (228-265)||(7138169-7138206)
chr6 (302-339)||(9412065-9412102)
chr6 (311-339)||(6432774-6432802)
chr6 (217-265)||(14809717-14809765)
[»] chr5 (1 HSPs)
chr5 (303-339)||(17205674-17205710)
[»] chr4 (1 HSPs)
chr4 (219-267)||(553775-553823)
[»] chr1 (2 HSPs)
chr1 (307-339)||(30827739-30827771)
chr1 (302-339)||(7555139-7555176)
[»] chr8 (1 HSPs)
chr8 (305-339)||(32151909-32151943)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 10578891 - 10579210
Alignment:
Q  19 caaacacctactcaaaaggttccccaacctcacttccattacgcttaactactgcgtcggcatttcttgtgacattgacaacatttttcgcttaatctct 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||    
T  10578891 caaatacctactcaaaaggttccccaacctcacttccattacgcttaactactgcgtcggcgtttcttgtgacgttgacaacatttttcgcttaatcact 10578990  T
Q  119 agtttcccgttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaaactcaactcgctagcactctccggcgaaagcatct 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10578991 agtttcc-gttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaaactcaactcgctagctctctccggcgaaagcatct 10579089  T
Q  219 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcat 318  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| |    
T  10579090 ttcccacagatgggttacgagctttctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgt 10579189  T
Q  319 tgccgattgtttccctttgct 339  Q
    ||||||||||||||| |||||    
T  10579190 tgccgattgtttcccattgct 10579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 86 - 339
Target Start/End: Original strand, 6596094 - 6596347
Alignment:
Q  86 tgtgacattgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaaac 185  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||| |||||||  ||||| ||| ||||||    
T  6596094 tgtgacgtcgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatttctcgttttcaccggcgaacctagattcccatttaagaaac 6596193  T
Q  186 tcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctac 285  Q
    | || ||||| |  |||||||||||||||||||||||| | || ||||||| || ||||||||||||||||||||||||||| | | | ||||||||||     
T  6596194 ttaaatcgctcgttctctccggcgaaagcatctttcccgctgacgggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctat 6596293  T
Q  286 tgacttcctatacaaaaatgacttgttactcattgccgattgtttccctttgct 339  Q
      |||| || |||||||||||||||||||||||||| ||||||||||| |||||    
T  6596294 aaactttctctacaaaaatgacttgttactcattgctgattgtttcccattgct 6596347  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 6423969 - 6423921
Alignment:
Q  219 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 267  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgac 6423921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 6395603 - 6395553
Alignment:
Q  217 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 267  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  6395603 ctttcccacagatgggttgcaagctctctcccaaaatattacaactttgac 6395553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 6424032 - 6423989
Alignment:
Q  105 ttcgcttaatctctagtttcccgttgaagaaactcacatcgctc 148  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  6424032 ttcgcttaatctctagtttcccattgaagaaactcacgtcgctc 6423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 6410761 - 6410711
Alignment:
Q  217 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 267  Q
    |||||||| | |||||||||||| ||||||||||||||| |||||||||||    
T  6410761 ctttcccataaatgggttgcaagttttctcccaaaacattacaactttgac 6410711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 6436882 - 6436852
Alignment:
Q  309 tgttactcattgccgattgtttccctttgct 339  Q
    |||||||||||||||||||||||||||||||    
T  6436882 tgttactcattgccgattgtttccctttgct 6436852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 19633166 - 19633116
Alignment:
Q  217 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 267  Q
    |||||||||| ||||||||| |||||||||| ||| ||| |||||||||||    
T  19633166 ctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgac 19633116  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 7132360 - 7132323
Alignment:
Q  228 atgggttgcaagctttctcccaaaacataacaactttg 265  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7132360 atgggttgcgagctttctcccaaaacattacaactttg 7132323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 7135283 - 7135246
Alignment:
Q  228 atgggttgcaagctttctcccaaaacataacaactttg 265  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7135283 atgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 7138206 - 7138169
Alignment:
Q  228 atgggttgcaagctttctcccaaaacataacaactttg 265  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7138206 atgggttgcgagctttctcccaaaacattacaactttg 7138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 9412102 - 9412065
Alignment:
Q  302 aatgacttgttactcattgccgattgtttccctttgct 339  Q
    |||||||||||||||||||| || ||||||||||||||    
T  9412102 aatgacttgttactcattgctgaatgtttccctttgct 9412065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 339
Target Start/End: Complemental strand, 6432802 - 6432774
Alignment:
Q  311 ttactcattgccgattgtttccctttgct 339  Q
    |||||||||||||||||||||||||||||    
T  6432802 ttactcattgccgattgtttccctttgct 6432774  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 14809765 - 14809717
Alignment:
Q  217 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttg 265  Q
    ||||||| || | |||||||||| ||||||||||||||| |||||||||    
T  14809765 ctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttg 14809717  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 17205710 - 17205674
Alignment:
Q  303 atgacttgttactcattgccgattgtttccctttgct 339  Q
    ||||| |||||||||||||||||||||||||||||||    
T  17205710 atgacctgttactcattgccgattgtttccctttgct 17205674  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 553823 - 553775
Alignment:
Q  219 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 267  Q
    ||||| || ||||||||| |||||||||||||||||| |||||||||||    
T  553823 ttcccgcaaatgggttgcgagctttctcccaaaacattacaactttgac 553775  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 30827771 - 30827739
Alignment:
Q  307 cttgttactcattgccgattgtttccctttgct 339  Q
    |||||||||||||||||||||||||||||||||    
T  30827771 cttgttactcattgccgattgtttccctttgct 30827739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 7555176 - 7555139
Alignment:
Q  302 aatgacttgttactcattgccgattgtttccctttgct 339  Q
    |||||||||||||||||||| || ||||||||||||||    
T  7555176 aatgacttgttactcattgctgaatgtttccctttgct 7555139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 32151943 - 32151909
Alignment:
Q  305 gacttgttactcattgccgattgtttccctttgct 339  Q
    |||||||| ||||||||||||||||||||||||||    
T  32151943 gacttgttcctcattgccgattgtttccctttgct 32151909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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