View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1573_low_11 (Length: 342)
Name: NF1573_low_11
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 45568205 - 45567901
Alignment:
| Q |
1 |
gattgttagatacccttaatttagttttaatttgttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttcattatccctatt |
100 |
Q |
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| T |
45568205 |
gattgttagatacccttaatttagttttaattagttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttcattatccctatt |
45568106 |
T |
|
| Q |
101 |
tgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagnnnnnnnnncctcgtgtcttaatt |
200 |
Q |
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| T |
45568105 |
tgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagtttttttttcctcgtgtcttaatt |
45568006 |
T |
|
| Q |
201 |
ggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaaagggtagatgagaatttaaagaatattggtcattacagacactac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
45568005 |
ggttaattaacaggtcttaaattgtcttaacggaccagttatctcat---------------------atttaaagaatattggtcattacagacacaac |
45567927 |
T |
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| Q |
301 |
gtttgaatcctgatgaggacaatatc |
326 |
Q |
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| T |
45567926 |
gtttgaatcctgatgaggacaatatc |
45567901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 35817131 - 35817398
Alignment:
| Q |
57 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaat |
156 |
Q |
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| T |
35817131 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggatgatagtgttaatttaatcgatgagaaattatttgaaaagcaaat |
35817230 |
T |
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| Q |
157 |
ggaccgctgagaagatgca-gnnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaa |
255 |
Q |
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| T |
35817231 |
ggaccactgggaagatgcaggtttttttttcctcgtgtcttaaatggtt-attaacaggtcttaaattgtctcaatggaccagttatctc--atctgaaa |
35817327 |
T |
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| Q |
256 |
agggtagatgagaatttaaagaatattggtcattacagacactacgtttgaatcctgatgaggacaatatc |
326 |
Q |
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| T |
35817328 |
agggtagatgagaaattatagaatattggtcattatagacactacatttgaatactgacgaggacaatatc |
35817398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 69 - 325
Target Start/End: Complemental strand, 45093218 - 45092972
Alignment:
| Q |
69 |
gatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgaga |
168 |
Q |
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| T |
45093218 |
gatacttgccacaatttttcactatccctatttgagtcttggatgatag-gttaatctaatcattgagaaataatttgaaaagcaactggaccattgaga |
45093120 |
T |
|
| Q |
169 |
agatgcagnnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaaagggtagatgaga |
268 |
Q |
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| T |
45093119 |
aaatgca-agtttttttcctcgtgtattaaatggttaattaacaggtcttaa--------aatggaagagttctctcatatctcaaaagggtagatgaga |
45093029 |
T |
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| Q |
269 |
atttaaagaatattggtcattacagacactacgtttgaatcctgatgaggacaatat |
325 |
Q |
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||||||||||| ||| || || ||||||||| |||||||| |||||||||||||| |
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| T |
45093028 |
atttaaagaattttgatcgttgtagacactacatttgaatctcgatgaggacaatat |
45092972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35816828 - 35816864
Alignment:
| Q |
1 |
gattgttagatacccttaatttagttttaatttgttt |
37 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
35816828 |
gattgttagatacccttaatttagttttaattagttt |
35816864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45093525 - 45093489
Alignment:
| Q |
1 |
gattgttagatacccttaatttagttttaatttgttt |
37 |
Q |
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||||||||||||||||| |||||||||||||| |||| |
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| T |
45093525 |
gattgttagatacccttcatttagttttaattagttt |
45093489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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