View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1573_low_13 (Length: 327)
Name: NF1573_low_13
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_low_13 |
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| [»] scaffold1234 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 33867523 - 33867824
Alignment:
| Q |
20 |
atggctgccactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcaggattttcctcaatttagatatg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867523 |
atggctgccactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcaggattttcctcaatttagatatg |
33867622 |
T |
|
| Q |
120 |
gcttgattttattgtcaaaatataccattatgaaaaacaaatttctnnnnnnntgtcttgtgctcaaacttttctctttgtgcatgtatgatgacatata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867623 |
gcttgattttattgtcaaaatataccattatgaaaaacaaatttctaaaaaaatgtcttgtgctcaaacttttctctttgtgcatgtatgatgacatata |
33867722 |
T |
|
| Q |
220 |
attcatttggcagcatgtaatttcttttgttgcaggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867723 |
attcatttggcagcatgtaatttcttttgttgcaggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctt |
33867822 |
T |
|
| Q |
320 |
tt |
321 |
Q |
| |
|
|| |
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|
| T |
33867823 |
tt |
33867824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 5770526 - 5770225
Alignment:
| Q |
20 |
atggctgccactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcaggattttcctcaatttagatatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770526 |
atggctgccactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcaggattttcctcaatttagatatg |
5770427 |
T |
|
| Q |
120 |
gcttgattttattgtcaaaatataccattatgaaaaacaaatttctnnnnnnntgtcttgtgctcaaacttttctctttgtgcatgtatgatgacatata |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770426 |
gcttgattttattgtcaaaatataccattatgaaaaacaaatttctaaaaaaatgtcttgtgctcaaacttttctctttgtgcatgtatgatgacatata |
5770327 |
T |
|
| Q |
220 |
attcatttggcagcatgtaatttcttttgttgcaggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctt |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5770326 |
attcatttggcagcatgtaatttcttttgttgcaggtatatgtataatttacatgataccatttaatttcttcaacacccacatgttttagcattgtctt |
5770227 |
T |
|
| Q |
320 |
tt |
321 |
Q |
| |
|
|| |
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|
| T |
5770226 |
tt |
5770225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1234 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold1234
Description:
Target: scaffold1234; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 68 - 369
Alignment:
| Q |
20 |
atggctgccactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcaggattttcctcaatttagatatg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
68 |
atggctgccactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcatgattttcctcaatttagacgtg |
167 |
T |
|
| Q |
120 |
gcttgattttattgtcaaaatataccattatgaaaaacaaatttctnnnnnnntgtcttgtgctcaaacttttctctttgtgcatgtatgatgacatata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
168 |
gcttgattttattgtcaaaatataccattatgaaaaacaaatttctaaaaaaatgtcttgtgctcaaacttttctctttgtgcatgtatgatgacatata |
267 |
T |
|
| Q |
220 |
attcatttggcagcatgtaatttcttttgttgcaggtatatgtataatttacatgataccatttaatttcttcaactcccacatgttttagcattgtctt |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
268 |
attcatttggcagcatgtaatttcttttgttgcaggtatatgtataatttacatgataccatttaatttcttcaacacccacatgttttagcattgtctt |
367 |
T |
|
| Q |
320 |
tt |
321 |
Q |
| |
|
|| |
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|
| T |
368 |
tt |
369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 23214215 - 23214120
Alignment:
| Q |
20 |
atggctgccactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcaggattttcctcaatttaga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23214215 |
atggctgccactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcatgattttcctcaatttaga |
23214120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 26497032 - 26497133
Alignment:
| Q |
28 |
cactttaactaacataaatgatttctccaccaaactttaggttgatccttctattggaatgttacttcaggattttcctcaatttagatatggcttgatt |
127 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||| ||| |||||||||| ||||||| |||||||||||||| |||||| ||| |||||||| |
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| T |
26497032 |
cactttaactaacataaatgattcctccacacatatttaaactgagccttctattgaaatgttaattcaggattttccttaatttaaatactgcttgatt |
26497131 |
T |
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| Q |
128 |
tt |
129 |
Q |
| |
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|| |
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|
| T |
26497132 |
tt |
26497133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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