View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1573_low_15 (Length: 285)
Name: NF1573_low_15
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 35069267 - 35069008
Alignment:
| Q |
1 |
gaagcattattttgataatgcttttatgccaactgtttctcttaataactaatcttacgnnnnnnnnncaattaaaatgaatctgaaaaattgagcataa |
100 |
Q |
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| T |
35069267 |
gaagcattattttgataatgcttttattccaactttttctcttattaactaatgtcacgttttt----cacttaaaatgaatctgaaaaattgagcataa |
35069172 |
T |
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| Q |
101 |
gaagtgtacttacactaaaattgtaatgacgcaccaaggactgaacaaagagtggaaatgaaagagctaccnnnnnnnttgctagaaaaggtggctccat |
200 |
Q |
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| T |
35069171 |
gaagtgtacttacactaaaattgtaatgacgcaccaaggactgaacaaagagtggaaatgaaagagctaccaaaaaaattgctagaaaacgtggctccat |
35069072 |
T |
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| Q |
201 |
tctcttaagcaatttaattttttctatcaattcaatccttcccttacacttattaatctcctct |
264 |
Q |
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| T |
35069071 |
tctcttaagcaattgaattttttctgtcaattcaatccttcccttacacttattaatctcctct |
35069008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 76 - 264
Target Start/End: Complemental strand, 35053280 - 35053090
Alignment:
| Q |
76 |
aatgaatctgaaaaattgagcataagaagtgtacttacactaaaattgtaatgacgcaccaaggactgaacaaagagtggaaatgaaagagctaccnnnn |
175 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35053280 |
aatgaacctgaaaaattgagcataagaagtgtacttacactaaaattgtaatgacgcaccaaggactgaacaaagagtggagatgaaagagctaccaaaa |
35053181 |
T |
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| Q |
176 |
nnnttgctagaaaaggtggctccattctcttaagcaatttaattttttc--tatcaattcaatccttcccttacacttattaatctcctct |
264 |
Q |
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| T |
35053180 |
aaattgctagaaaacgtggctccattctcttaagcaattaaaatttttctttgtcaattcaatctttcccttacacttatgaatctcctct |
35053090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35053344 - 35053312
Alignment:
| Q |
1 |
gaagcattattttgataatgcttttatgccaac |
33 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
35053344 |
gaagcactattttgataatgcttttatgccaac |
35053312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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