View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1573_low_4 (Length: 431)
Name: NF1573_low_4
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 78 - 414
Target Start/End: Complemental strand, 22572688 - 22572342
Alignment:
| Q |
78 |
tagcaagttttcattcagaaaatatattttgtcacaacgtttgatccttgcttttatgcaaactcgtatgtatgtatccttcagcattttaaattaattt |
177 |
Q |
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| T |
22572688 |
tagcaagtattcattcagaaaatatattttgtcacaacgtttgatccttgcttttctgcaaactcgtatgtatgtatccttcaacattttaaattaattt |
22572589 |
T |
|
| Q |
178 |
tctgcggttaggcttggtatattaaatatagatcttttataaaagttttataagggtcaattaaatatgaattttaaat-ttttagcgttgaaaatttta |
276 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
22572588 |
tctgcggttaggtttggtatattaaagatagatcttttataaaagttttataagggtcaattaaatatgaattttaaattttttagcattgaaaatttta |
22572489 |
T |
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| Q |
277 |
tgttattnnnnnnnttctaaatttttg---------tttgtataacaatgatcaaaagaatgtgaatgatacacaagagttgacgtaaaaacaaagatca |
367 |
Q |
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||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22572488 |
tgttattacaaaaattataaatttttgtcgaagagatttgtataacaatgatcaaaagaatgtgaataatacacaagagttgacgtaaaaacaaagatac |
22572389 |
T |
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| Q |
368 |
aaagtcatgatagaaattgttttggactggtcaaaagaacaatcaca |
414 |
Q |
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||||||||||||||||||||| ||||| ||||||||| |||||||| |
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| T |
22572388 |
aaagtcatgatagaaattgttctggaccagtcaaaagaccaatcaca |
22572342 |
T |
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