View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1573_low_6 (Length: 373)
Name: NF1573_low_6
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573_low_6 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 4462226 - 4462581
Alignment:
| Q |
1 |
aacctctcttaggaagaaaaagggaacaaagatgacatacctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4462226 |
aacctctcttaggaagaaaaagggaacaaagatgatatacctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagc |
4462325 |
T |
|
| Q |
101 |
aacatgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4462326 |
aacatgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaac |
4462425 |
T |
|
| Q |
201 |
cggagggataagaccggtagtggcagaggcatcaagtcttgtaaggagttcaccaaagggttgaatgaagttcatcatgattgattgaaaaaataagtgt |
300 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4462426 |
cggagggataagatcggcagtggcagaggcatcaagtcttgtaagaagttcactaaagggttgaatgaagttcatcatgattgattgaaaaaataagtgt |
4462525 |
T |
|
| Q |
301 |
acgtcttgaaaaacatcaccagtttccattgttgtaaaaccatttggaatggtctc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4462526 |
acgtcttgaaaaacatcaccagtttccattgttgtaaaaccatttggaatggtctc |
4462581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 4470936 - 4471288
Alignment:
| Q |
4 |
ctctcttaggaagaaaaagggaacaaagatgacatacctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagcaac |
103 |
Q |
| |
|
||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4470936 |
ctctcataagaagaaaaagggaacgaagatgatatacctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagcaac |
4471035 |
T |
|
| Q |
104 |
atgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccgg |
203 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
4471036 |
atgcgctgaccggagaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaactgg |
4471135 |
T |
|
| Q |
204 |
agggataagaccggtagtggcagaggcatcaagtcttgtaaggagttcaccaaagggttgaatgaagttcatcatgattgattgaaaaaataagtgtacg |
303 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| | ||||||||||| ||||||| |||||| | |
|
|
| T |
4471136 |
agggataagaccagcagtggcagaggcatcaagtctagtaagaagttcaccaaagggttgaaggaagtccgtcatgattgatcgaaaaaaggagtgtatg |
4471235 |
T |
|
| Q |
304 |
tcttgaaaaacatcaccagtttccattgttgtaaaaccatttggaatggtctc |
356 |
Q |
| |
|
||||||| || ||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
4471236 |
tcttgaataagatcaccactttccattgcagtaaaaccatttggaatggtctc |
4471288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 4481885 - 4482107
Alignment:
| Q |
5 |
tctcttaggaagaaaaagggaacaaagatgacatacctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagcaaca |
104 |
Q |
| |
|
|||||||| ||||||||| ||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| || |||| |
|
|
| T |
4481885 |
tctcttagaaagaaaaagagaacataaatgatatacctttgagtggtagcacaccattctgaaacaatttaggaatcaaagaagtagagagtaagtaaca |
4481984 |
T |
|
| Q |
105 |
tgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccgga |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||| || ||||| ||||||||||||||||| ||||||||||||| |||||| || || |
|
|
| T |
4481985 |
tgcactgaccggggaaaagagaacaattgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggg |
4482084 |
T |
|
| Q |
205 |
gggataagaccggtagtggcaga |
227 |
Q |
| |
|
||||||| ||| | ||||||||| |
|
|
| T |
4482085 |
gggataataccagcagtggcaga |
4482107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 4489306 - 4489073
Alignment:
| Q |
2 |
acctctcttaggaagaaaaagggaacaaagatgacatacctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagca |
101 |
Q |
| |
|
||||| ||||||| ||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| | || | |
|
|
| T |
4489306 |
acctcccttaggatgaaaaagggaacata-atgat-tacctttgagtggtagcacaccattctgaaacaatttagtaatgtgaaaagtagagtagaagta |
4489209 |
T |
|
| Q |
102 |
acatgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaacc |
201 |
Q |
| |
|
| ||||||| |||||||||||||| |||||||||||| ||| |||||| ||||| |||||||||| ||| | ||||||||||||| ||||||||| |
|
|
| T |
4489208 |
agatgcactacatggggaaaagagaacaattgggagtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagtaact |
4489109 |
T |
|
| Q |
202 |
ggagggataagaccggtagtggcagaggcatcaagt |
237 |
Q |
| |
|
|||||||||||||| | ||| |||||| ||| |||| |
|
|
| T |
4489108 |
ggagggataagaccagcagtagcagagtcattaagt |
4489073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 4503368 - 4503169
Alignment:
| Q |
38 |
tacctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagcaacatgcactgaccggggaaaagagaacgattgggag |
137 |
Q |
| |
|
||||||||||||| |||| || ||| ||||||||||||| ||||||| |||||| | || || ||||||| ||||||| |||||| |||||||| |
|
|
| T |
4503368 |
tacctttgagtggtagcatactattgtgaaacaatttagcaatgtgaaaagtagagtagaagtaagatgcactacatggggaaacgagaacaattgggag |
4503269 |
T |
|
| Q |
138 |
tgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagaccggtagtggcagaggcatcaagt |
237 |
Q |
| |
|
|| | ||| |||||| |||| |||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||| | |||||||||| ||| |||| |
|
|
| T |
4503268 |
tgtatgttcttcagcagcatatactggaaatggcatgttgcaatcagaaactaagcaagtaactggagggataagaccagcagtggcagagtcattaagt |
4503169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 4575585 - 4575698
Alignment:
| Q |
115 |
ggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagac |
214 |
Q |
| |
|
|||||||| ||||| |||||||| ||| ||| |||||| ||||| ||||||||||||||||| ||||||||||||| |||||| || || |||||||||| |
|
|
| T |
4575585 |
ggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagac |
4575684 |
T |
|
| Q |
215 |
cggtagtggcagag |
228 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
4575685 |
cagcagtggcagag |
4575698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 4561792 - 4561905
Alignment:
| Q |
115 |
ggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagac |
214 |
Q |
| |
|
|||||||| ||||| | |||||||||| ||| |||||| ||| | ||||||||||||||||| ||||||||||||| |||||| || || |||||||||| |
|
|
| T |
4561792 |
ggggaaaaaagaacaactgggagtgcatgttcttcagcagcagctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagac |
4561891 |
T |
|
| Q |
215 |
cggtagtggcagag |
228 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
4561892 |
cagcagtggcagag |
4561905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 3173022 - 3173233
Alignment:
| Q |
5 |
tctcttaggaagaaaaagggaacaaagatgacat-acctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagcaac |
103 |
Q |
| |
|
|||||| |||||||||||||| | | |||| || |||||||||||| || | |||||||||||||||||||||||| ||| || || | || ||| |
|
|
| T |
3173022 |
tctctttggaagaaaaagggattataaatgatattacctttgagtggtagtagaccattctgaaacaatttaggaatatgaaaaccagccaagaagaaac |
3173121 |
T |
|
| Q |
104 |
atgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccgg |
203 |
Q |
| |
|
||||||| ||| ||||| ||||| |||||||| ||| ||| |||||| |||| |||||||||||||| || ||||| ||||| | ||||||||| || |
|
|
| T |
3173122 |
atgcactacacggcgaaaatagaacaattgggagagcatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactgg |
3173221 |
T |
|
| Q |
204 |
agggataagacc |
215 |
Q |
| |
|
||| |||||||| |
|
|
| T |
3173222 |
aggtataagacc |
3173233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 287
Target Start/End: Complemental strand, 4266052 - 4265883
Alignment:
| Q |
118 |
gaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagaccgg |
217 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||| || ||||| | |||||| |||||||||||||| ||||| | |||||||| || || |||| ||| |
|
|
| T |
4266052 |
gaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccat |
4265953 |
T |
|
| Q |
218 |
tagtggcagaggcatcaagtcttgtaaggagttcaccaaagggttgaatgaagttcatcatgattgattg |
287 |
Q |
| |
|
| ||||||| || |||||| ||||| |||||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
4265952 |
cattggcagattgatgaagtctagtaagaagttcatcaaagggttgaaggaagttcgtcatgattgattg |
4265883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 4581209 - 4581315
Alignment:
| Q |
180 |
atcagaaactatgcaagtaaccggagggataagaccggtagtggcagaggcatcaagtcttgtaaggagttcaccaaagggttgaatgaagttcatcatg |
279 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| | |||||||||| ||| |||||| | ||| ||||||| ||| ||||| | ||||||| | || |
|
|
| T |
4581209 |
atcagaaactatgcaagtaactggagggacaagaccagaagtggcagagtcattaagtctagcaagaagttcacaaaaaggttgtaggaagttctttctg |
4581308 |
T |
|
| Q |
280 |
attgatt |
286 |
Q |
| |
|
||||||| |
|
|
| T |
4581309 |
attgatt |
4581315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 260
Target Start/End: Original strand, 4623437 - 4623582
Alignment:
| Q |
115 |
ggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagac |
214 |
Q |
| |
|
||||| |||| ||| |||||||||||| | | |||||| || | | |||||||| |||||||||||| ||||||| ||||||||| || || | ||||| |
|
|
| T |
4623437 |
ggggagaagaaaacaattgggagtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagac |
4623536 |
T |
|
| Q |
215 |
cggtagtggcagaggcatcaagtcttgtaaggagttcaccaaaggg |
260 |
Q |
| |
|
| | |||||||||| ||| |||| ||| ||| ||||||| |||||| |
|
|
| T |
4623537 |
cagcagtggcagagtcatgaagttttgcaagaagttcacaaaaggg |
4623582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 4259125 - 4259016
Alignment:
| Q |
164 |
taaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagaccggtagtggcagaggcatcaagtcttgtaaggagttcaccaaagggttg |
263 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| || || | || ||| |||||||| ||| | | |||| | | ||| |||||||||||||| || |
|
|
| T |
4259125 |
taaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggctgagtcttgaagtttagcaagaagttcaccaaagggctg |
4259026 |
T |
|
| Q |
264 |
aatgaagttc |
273 |
Q |
| |
|
|| ||||||| |
|
|
| T |
4259025 |
aaggaagttc |
4259016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 4255637 - 4255552
Alignment:
| Q |
115 |
ggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaac |
200 |
Q |
| |
|
||||||| |||||| |||||||||||| | | |||||| || | | ||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
4255637 |
ggggaaaggagaacaattgggagtgcatgctcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaac |
4255552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 273
Target Start/End: Original strand, 4627283 - 4627438
Alignment:
| Q |
118 |
gaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagaccgg |
217 |
Q |
| |
|
||||||||| | |||||||||||| ||| |||||| || | | ||||||| ||| ||||||| ||||||| ||||||||| || | | |||||| | |
|
|
| T |
4627283 |
gaaaagagagcaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccag |
4627382 |
T |
|
| Q |
218 |
tagtggcagaggcatcaagtcttgtaaggagttcaccaaagggttgaatgaagttc |
273 |
Q |
| |
|
|||||| ||| ||| |||| | | ||| |||||||||||||| |||| ||||||| |
|
|
| T |
4627383 |
cagtggctgagtcatgaagtttagcaagaagttcaccaaagggctgaaggaagttc |
4627438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 3534 - 3398
Alignment:
| Q |
101 |
aacatgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaac |
200 |
Q |
| |
|
||||||||||| | | |||||||||||| |||||||||||| ||| |||||| || | | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3534 |
aacatgcactgccggtggaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaac |
3435 |
T |
|
| Q |
201 |
cggagggataagaccggtagtggcagaggcatcaagt |
237 |
Q |
| |
|
| || | |||||| | |||||||||| ||| |||| |
|
|
| T |
3434 |
ttgtggaacaagaccagcagtggcagagtcatgaagt |
3398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 24104270 - 24104397
Alignment:
| Q |
160 |
actgtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagaccggtagtggcagaggcatcaagtcttgtaaggagttcaccaaagg |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| || || |||| ||| | ||||||| || |||||| ||||| |||||| |||||| |
|
|
| T |
24104270 |
actgtaaatggcatgtaacaatccgaaactaagcaagtaattggtggaataacaccatcattggcagattgatgaagtctagtaagaagttcatcaaagg |
24104369 |
T |
|
| Q |
260 |
gttgaatgaagttcatcatgattgattg |
287 |
Q |
| |
|
| |||| ||||||| ||||||||||||| |
|
|
| T |
24104370 |
gctgaaggaagttcgtcatgattgattg |
24104397 |
T |
|
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Target: scaffold0288 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 2404 - 2352
Alignment:
| Q |
163 |
gtaaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagacc |
215 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||| || |||||||||||||| |
|
|
| T |
2404 |
gtaaatgacatgtaacaatcagaaactaagctagttactggagggataagacc |
2352 |
T |
|
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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 2001 - 2051
Alignment:
| Q |
165 |
aaatggcatgtaacaatcagaaactatgcaagtaaccggagggataagacc |
215 |
Q |
| |
|
||||| |||||||||||||||||||| || ||| || |||||||||||||| |
|
|
| T |
2001 |
aaatgacatgtaacaatcagaaactaagctagttactggagggataagacc |
2051 |
T |
|
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