View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574-INSERTION-1 (Length: 192)
Name: NF1574-INSERTION-1
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574-INSERTION-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 41459415 - 41459600
Alignment:
| Q |
7 |
acacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttcatgttcccgaaccatatttttgtttcgcgtttctc |
106 |
Q |
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| T |
41459415 |
acacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttcatgttcccgaaccatatttttgtttcgcgtttctc |
41459514 |
T |
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| Q |
107 |
cttttctgannnnnnnatgttattctagattcagcttagttgtcttgcttaagactaatttatctttattctttgcgagccttgaa |
192 |
Q |
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| T |
41459515 |
cttttctgatttttttatgttattctagattcagcttagttgtcttgcttaagactaatttatctttattctttgcgagccttgaa |
41459600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 41442640 - 41442679
Alignment:
| Q |
25 |
atggatatgcagctcctgaatatgtagattcaggtatttt |
64 |
Q |
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| T |
41442640 |
atggatatgcagctcctgaatatctagctacaggtatttt |
41442679 |
T |
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