View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1574-INSERTION-2 (Length: 186)

Name: NF1574-INSERTION-2
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1574-INSERTION-2
NF1574-INSERTION-2
[»] chr8 (13 HSPs)
chr8 (7-179)||(30432339-30432518)
chr8 (8-178)||(44081781-44081959)
chr8 (8-179)||(36189216-36189393)
chr8 (8-179)||(31318805-31318984)
chr8 (17-179)||(42162598-42162768)
chr8 (8-176)||(18184556-18184731)
chr8 (8-176)||(12665347-12665524)
chr8 (8-175)||(10203668-10203843)
chr8 (8-175)||(43186031-43186205)
chr8 (8-173)||(33726017-33726190)
chr8 (102-158)||(42668895-42668951)
chr8 (102-174)||(31561-31633)
chr8 (115-174)||(3690729-3690788)
[»] chr2 (11 HSPs)
chr2 (8-179)||(33732569-33732747)
chr2 (8-176)||(44958116-44958292)
chr2 (8-179)||(16089822-16089999)
chr2 (16-179)||(14572995-14573166)
chr2 (8-179)||(3830910-3831086)
chr2 (8-179)||(37498875-37499056)
chr2 (17-179)||(36315561-36315730)
chr2 (17-179)||(37914259-37914427)
chr2 (8-179)||(6376251-6376424)
chr2 (54-179)||(24137151-24137287)
chr2 (57-96)||(41188859-41188898)
[»] chr3 (21 HSPs)
chr3 (7-179)||(21559561-21559741)
chr3 (9-179)||(34749911-34750089)
chr3 (18-180)||(22894679-22894849)
chr3 (8-175)||(46111956-46112131)
chr3 (17-184)||(43999984-44000159)
chr3 (8-179)||(51339796-51339972)
chr3 (17-179)||(36749406-36749576)
chr3 (8-179)||(30735508-30735686)
chr3 (17-179)||(36370359-36370529)
chr3 (8-176)||(48200688-48200864)
chr3 (17-179)||(38231293-38231461)
chr3 (102-179)||(29460660-29460737)
chr3 (102-179)||(29471512-29471589)
chr3 (8-94)||(29472901-29472987)
chr3 (23-171)||(20856182-20856334)
chr3 (34-179)||(39072317-39072464)
chr3 (54-157)||(53638157-53638267)
chr3 (57-179)||(50966131-50966256)
chr3 (57-179)||(51069266-51069391)
chr3 (17-179)||(39467123-39467292)
chr3 (117-172)||(29820428-29820483)
[»] chr4 (13 HSPs)
chr4 (8-179)||(28093108-28093287)
chr4 (8-179)||(49243815-49243993)
chr4 (17-179)||(3672274-3672444)
chr4 (17-179)||(7217765-7217935)
chr4 (8-179)||(21390968-21391146)
chr4 (17-179)||(6112630-6112799)
chr4 (7-179)||(44275706-44275885)
chr4 (8-179)||(35544912-35545091)
chr4 (17-179)||(46192359-46192528)
chr4 (54-179)||(45829316-45829448)
chr4 (57-174)||(51038768-51038893)
chr4 (133-175)||(43245522-43245564)
chr4 (102-179)||(52191314-52191391)
[»] chr1 (8 HSPs)
chr1 (8-179)||(39249875-39250054)
chr1 (8-181)||(34307150-34307331)
chr1 (17-175)||(2509028-2509194)
chr1 (8-179)||(46901747-46901926)
chr1 (8-179)||(19258685-19258863)
chr1 (102-174)||(10146971-10147043)
chr1 (8-179)||(28647353-28647531)
chr1 (102-175)||(29099821-29099893)
[»] chr6 (6 HSPs)
chr6 (8-179)||(3986918-3987096)
chr6 (8-179)||(3118059-3118238)
chr6 (8-179)||(13697569-13697746)
chr6 (8-179)||(14022934-14023112)
chr6 (8-179)||(15345672-15345848)
chr6 (8-179)||(24208444-24208622)
[»] chr7 (24 HSPs)
chr7 (8-179)||(26972215-26972394)
chr7 (8-179)||(28307507-28307686)
chr7 (8-179)||(36346577-36346755)
chr7 (17-173)||(31148296-31148459)
chr7 (17-179)||(30887700-30887869)
chr7 (17-179)||(42220984-42221154)
chr7 (8-176)||(34828069-34828243)
chr7 (17-179)||(7699904-7700074)
chr7 (17-179)||(7700102-7700272)
chr7 (17-179)||(7700300-7700470)
chr7 (17-179)||(7700498-7700668)
chr7 (17-179)||(34108426-34108596)
chr7 (32-179)||(45782696-45782851)
chr7 (8-181)||(5811176-5811356)
chr7 (55-173)||(23980137-23980262)
chr7 (8-179)||(13108148-13108325)
chr7 (37-175)||(21807364-21807509)
chr7 (54-161)||(36957447-36957561)
chr7 (102-174)||(38321014-38321086)
chr7 (57-179)||(15020282-15020408)
chr7 (8-101)||(46475109-46475203)
chr7 (8-88)||(29953584-29953665)
chr7 (57-144)||(20086690-20086784)
chr7 (114-145)||(29953661-29953692)
[»] chr5 (17 HSPs)
chr5 (8-179)||(39370927-39371106)
chr5 (8-179)||(40887954-40888133)
chr5 (34-179)||(1815655-1815807)
chr5 (8-179)||(2237276-2237455)
chr5 (8-179)||(13347128-13347307)
chr5 (15-179)||(9408058-9408230)
chr5 (7-179)||(27553385-27553564)
chr5 (17-168)||(14831555-14831714)
chr5 (102-181)||(33404550-33404629)
chr5 (17-142)||(31800595-31800727)
chr5 (54-179)||(17225319-17225449)
chr5 (7-101)||(42683684-42683779)
chr5 (7-179)||(4300555-4300734)
chr5 (102-179)||(19596181-19596258)
chr5 (55-175)||(19124532-19124657)
chr5 (60-170)||(41003915-41004031)
chr5 (102-176)||(12164254-12164328)
[»] scaffold0062 (1 HSPs)
scaffold0062 (17-175)||(6722-6888)
[»] scaffold0043 (1 HSPs)
scaffold0043 (8-175)||(87175-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (114-152)||(5943-5981)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 30432518 - 30432339
Alignment:
Q  7 atagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    ||||||| | ||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||         
T  30432518 atagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttcatctcttctttc 30432419  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  30432418 aatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 44081959 - 44081781
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| ||||||||||||| |||||||||||| ||||||||||||         
T  44081959 tagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctcttctttc 44081860  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 178  Q
      ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44081859 aatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 36189393 - 36189216
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | ||||||||||||||||||||||||||| || | ||  |||||||||| |||||||| ||||||||||||| | ||||||||||||          
T  36189393 tagacaccctttttcatacaccacttatgtacaccc-atatgttaggggtattttaataattttatatcatatcatcactccttttcatctcttctttca 36189295  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36189294 atatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 31318984 - 31318805
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||||||||||||||||||  ||||| |||||||| |||||||  | |||||| |||||||||||||||||||||||||| ||||||||||||         
T  31318984 tagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttctttc 31318885  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||||||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||    
T  31318884 aatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctc 31318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 42162768 - 42162598
Alignment:
Q  17 tttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||   ||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||    
T  42162768 tttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttttt 42162669  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42162668 gtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 18184731 - 18184556
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||||| |||||||||||||  ||||||||||| ||||| ||  ||||||||||||||||||| ||||||||||||||| ||||||||||||          
T  18184731 tagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttcatctcttcattca 18184632  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 176  Q
     |||||| |||||||||||||||| ||||||| |||||||||||||||| ||| |||| |||||||| ||||||||    
T  18184631 atgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 12665524 - 12665347
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttc-atctctt---- 101  Q
    |||||||| |||||| |||||| |||||||| |||| ||||| ||  ||||||||||||||||||||||||||||||||||| ||||  |||||||        
T  12665524 tagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcaccctttttttatctcttcttt 12665425  T
Q  102 ---tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 176  Q
       ||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  12665424 caatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 10203843 - 10203668
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||| | ||||||||||||| ||||||||  || |||||||||||||||| ||||||||| ||||| ||||||||||||         
T  10203843 tagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctttttcatctcttctttc 10203744  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
      | |||||  |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  10203743 aatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 10203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 43186205 - 43186031
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||||||||||||||||||  ||||||||||||| |||||||  ||| |||| |||||||||| ||||||||||||||  ||||||||| ||          
T  43186205 tagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttcatcttttctttca 43186106  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
     ||||||| |||| | |||||||||||||  |||||||||| || ||||||||||||  ||||| ||||||||||    
T  43186105 atgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataaga 43186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 33726190 - 33726017
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcaccca-ttttcatctctt----- 101  Q
    |||||| | ||||| ||||||| |  ||||||||  ||||| ||  ||||||||||||||||| |||||| ||| ||| ||| ||||||||||||         
T  33726190 tagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccacttttcatctcttctttc 33726091  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 173  Q
      ||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||  ||||| ||||||||    
T  33726090 aatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 42668895 - 42668951
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 158  Q
    ||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  42668895 tgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacctaag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 31561 - 31633
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 174  Q
    ||||||| |||| |||||||| ||| ||||||||| |||| |||||||| |||||||||||| ||| ||||||    
T  31561 tgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 3690729 - 3690788
Alignment:
Q  115 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 174  Q
    |||||||| ||||||||| | | ||||| |||||| ||||||||||| ||||||||||||    
T  3690729 tgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 4e-55; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 33732747 - 33732569
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | ||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||          
T  33732747 tagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttcatctcttctttca 33732648  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33732647 atgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 44958292 - 44958116
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||||| ||||||||||||| |||||||| |||| ||||| ||  ||||||||||||||||||||||||||||||||||| |||| |||||||         
T  44958292 tagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttttatctcttctttc 44958193  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 176  Q
      ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44958192 aatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 16089999 - 16089822
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | ||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||  |||| |||||||          
T  16089999 tagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt-atctcttctttca 16089901  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16089900 atgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctc 16089822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 14573166 - 14572995
Alignment:
Q  16 atttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttt 107  Q
    ||||| |||||||| |||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||| ||||||||       ||||||    
T  14573166 attttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttt 14573067  T
Q  108 taccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    | | ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||    
T  14573066 tgctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagagctc 14572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 3830910 - 3831086
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | ||||||||||||| |||||||||||||||||| ||  |||||| ||||||||||||||||| || ||||||  ||||||||||||          
T  3830910 tagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatctcttctttca 3831009  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| ||||||||||||||||||  |||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  3831010 atgtttttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctc 3831086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 37498875 - 37499056
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacc--cattttcatctctt--- 101  Q
    |||||| | ||||| ||||||| |||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||  | ||||||||||||       
T  37498875 tagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctctttttcatctcttctt 37498974  T
Q  102 ----tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
        ||||||| |||| ||||||||||||||||| |||||||||| |||||||||  |||||||||| || |||||||||||    
T  37498975 tcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctc 37499056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 36315730 - 36315561
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||| ||||||| |||||||||||| ||||| |   |||||||||| | |||| |||||| || ||||||  |||| |||||||       |||||||     
T  36315730 tttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttttatctcttctttcaatgtttttg 36315631  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36315630 ccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 37914259 - 37914427
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||| ||||||| |||||||||||||||||||  | |||||||||| | |||| |||||| || ||||||| |||| |||||||       |||||||     
T  37914259 tttttgatacacctcttatgtacaccccatgtac-cagggtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttg 37914357  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  37914358 ccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctc 37914427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 6376251 - 6376424
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctttgttt- 106  Q
    |||||||| ||||| ||||||| |  ||||||| | ||||| ||   |||||||||||||||| |||||| ||| |||||||||||||||||||  ||      
T  6376251 tagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttcatctcttctttca 6376350  T
Q  107 -ttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     |  |||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||    
T  6376351 atggccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 24137151 - 24137287
Alignment:
Q  54 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggt----gtaaaagg 142  Q
    ||||||||||||||||| |||||| ||| ||| || ||||||||||||       |||||||  ||| ||||||||||||||||||||    || |||||    
T  24137151 gggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaagg 24137250  T
Q  143 gtgtatgccacctaagatggttcatgtataagagctc 179  Q
    |||||| ||||||||| ||||| |||||||| |||||    
T  24137251 gtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 41188898 - 41188859
Alignment:
Q  57 tattttagtaattttacatcatatcatcacccattttcat 96  Q
    ||||||||||||||||||||| ||||||| || |||||||    
T  41188898 tattttagtaattttacatcacatcatcatcccttttcat 41188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 7e-54; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 7e-54
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 21559741 - 21559561
Alignment:
Q  7 atagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt---- 101  Q
    ||||||| ||||||||||||||| |||||||||||||| |||| ||  |||||||||||||||||||||||||||||| |||| ||||||||||||        
T  21559741 atagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattaccctttttcatctcttcttt 21559642  T
Q  102 ---tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
       | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21559641 caatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 21559561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 34749911 - 34750089
Alignment:
Q  9 agacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||          
T  34749911 agacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttca 34750010  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34750011 atgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 22894849 - 22894679
Alignment:
Q  18 ttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    |||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| ||||||||||||||| || ||||||||||||       |||||||     
T  22894849 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttg 22894750  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22894749 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcc 22894679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 46111956 - 46112131
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| |||||||||||||||  |||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||         
T  46111956 tagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttc 46112055  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
      ||||||| |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  46112056 aatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataaga 46112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 44000159 - 43999984
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||   |||||||| ||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||    
T  44000159 tttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttttt 44000060  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctccattc 184  Q
     ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  44000059 gccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctctattc 43999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 51339796 - 51339972
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | ||||||||||||| |||||||||||  ||||| ||   |||||||||||||||||||||||||||||||||| ||||||||||||          
T  51339796 tagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttcatctcttctttca 51339895  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  51339896 atgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctc 51339972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 36749576 - 36749406
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||   |||||||||||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||    
T  36749576 tttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttttt 36749477  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||    
T  36749476 gccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctc 36749406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 30735508 - 30735686
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccattttc-atct-cttt-- 102  Q
    |||||| | ||||||||||||||||||||||||| |||||| ||  ||||||||| |||||||| ||||||||||||||||| ||||  |||| ||||      
T  30735508 tagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccctttttatatcttctttca 30735607  T
Q  103 --gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      |||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  30735608 atgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctc 30735686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 36370359 - 36370529
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||   |||| ||||||| ||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||    
T  36370359 tttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttttt 36370458  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  36370459 gtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctc 36370529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 48200864 - 48200688
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||||| ||||||||||||   ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||         
T  48200864 tagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttc 48200765  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 176  Q
      | ||||| ||||||||||||||| | ||||| ||||||| |||||||||||||||||||| |||||| |||||||    
T  48200764 aatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 38231461 - 38231293
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||| ||||||| |||||||||||||||||| |   ||||| |||||| |||| |||| | || || ||| |||||||| ||||       |||||||     
T  38231461 tttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacc-attttcatatcttctttcaatgtttttg 38231363  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38231362 ccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 29460737 - 29460660
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29460737 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 29471589 - 29471512
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29471589 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 29472987 - 29472901
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 94  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  29472987 tagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 20856182 - 20856334
Alignment:
Q  23 atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc-atctcttt----gtttttaccacgtgt 117  Q
    ||||||| || ||||||||||||||| |   |||||||| |||||||||| |||| ||||||| || ||||  |||| |||    |||||| |||| |||    
T  20856182 atacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatcctttttatatctttttcaatgtttttgccacatgt 20856280  T
Q  118 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 171  Q
    ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  20856281 cacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 39072317 - 39072464
Alignment:
Q  34 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgt 126  Q
    ||||||||||||||| |   ||||||||||||||     ||||| |||||||||||||||||||||||       ||||| | |||| ||||||||||||    
T  39072317 atgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccattttcatctcttcttttaatgtttatgccacatgtcacaaatgt 39072411  T
Q  127 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     |||||||||||||||||||||| || ||||| || ||||||||||| |||||    
T  39072412 atgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctc 39072464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 53638267 - 53638157
Alignment:
Q  54 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 146  Q
    ||||||||||| |||||||||||| ||||||||||  | |||||||||       |||||||||||| |||||| | ||||||||||||| |||||||||    
T  53638267 gggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgt 53638168  T
Q  147 atgccacctaa 157  Q
    |||||||||||    
T  53638167 atgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 50966256 - 50966131
Alignment:
Q  57 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 149  Q
    ||||||||||||||||||| ||||||||   | ||||||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||    
T  50966256 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 50966160  T
Q  150 ccacctaagatggttcatgtataagagctc 179  Q
    ||||||||||| ||||||||||||||||||    
T  50966159 ccacctaagat-gttcatgtataagagctc 50966131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 51069391 - 51069266
Alignment:
Q  57 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 149  Q
    ||||||||||||||||||| ||||||||   | ||||||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||    
T  51069391 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 51069295  T
Q  150 ccacctaagatggttcatgtataagagctc 179  Q
    ||||||||||| ||||||||||||||||||    
T  51069294 ccacctaagat-gttcatgtataagagctc 51069266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 39467123 - 39467292
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||| ||||||| |  ||||||||| ||||| || ||| |||||||||||||| | |||| ||| |||||| ||||||||||||       | |||||     
T  39467123 ttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttg 39467222  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||| |||||||||| |||||||||||||||||||||||| || ||| | ||||| ||| |||| |||||    
T  39467223 gcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctc 39467292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 29820428 - 29820483
Alignment:
Q  117 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtata 172  Q
    |||||| ||| ||||||||| |||| |||||||||||||||| ||||  |||||||    
T  29820428 tcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 7e-51; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 28093108 - 28093287
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||  |||||||| |||| ||||||||||||||||||||| |||||||||||          
T  28093108 tagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttttcatctctcctttc 28093207  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28093208 aatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 28093287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 49243993 - 49243815
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||   |||| |||||||          
T  49243993 tagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcacttttttttatctcttctttca 49243894  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  49243893 atgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 3672444 - 3672274
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||||| ||||||||||||       |||||||    
T  3672444 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttcatctcttctttcaatgttttt 3672345  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3672344 gccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 7217935 - 7217765
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||| ||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||| |||| |||||||       |||||||    
T  7217935 tttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttttatctcttattttaatgttttt 7217836  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  7217835 gccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctc 7217765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 21390968 - 21391146
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | |||||||||||||  ||||||||||| ||||| ||  |||||||||||||||||||||||||||  |||| ||||||||||||||          
T  21390968 tagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttcatctcttctttca 21391067  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     | ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  21391068 atatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 21391146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 6112799 - 6112630
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||||||||||  ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| || ||||||||||||       |||||||     
T  6112799 tttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttg 6112700  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6112699 ccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctc 6112630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 44275885 - 44275706
Alignment:
Q  7 atagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    ||||||| | ||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| |||| |||||||         
T  44275885 atagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttaatctcttctttc 44275786  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      | |||||  ||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||    
T  44275785 aatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctc 44275706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 35545091 - 35544912
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||||||||||||||| |||||| ||  ||||||||| |||||||||||||||||||||||||| |||| || ||||         
T  35545091 tagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcacccctttttatatcttctttc 35544992  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| |||||| |||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  35544991 aatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctc 35544912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 46192528 - 46192359
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||| ||||||| |||||||||||||||||||    |||||||||| | |||| |||||| || ||||||| |||| |||||||       |||||||     
T  46192528 tttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttg 46192429  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46192428 ccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctc 46192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 45829316 - 45829448
Alignment:
Q  54 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 146  Q
    |||||||||| | |||| |||||| || ||||||| |||| |||||||       ||||||| |||| |||||||||||||||||||||||||| |||||    
T  45829316 gggtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgt 45829415  T
Q  147 atgccacctaagatggttcatgtataagagctc 179  Q
    ||| |||||||  ||||||||||||||||||||    
T  45829416 atgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  57 tattttagtaattttacatcatatcatcaccca-ttttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 148  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||       |||||||  ||| |||||||| ||||||||||||| ||||  |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  149 gccacctaagatggttcatgtataag 174  Q
    |||||||||| |||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 43245564 - 43245522
Alignment:
Q  133 gtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  43245564 gtgtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 52191314 - 52191391
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    |||||||  ||| |||||||| | ||||||| ||| ||| ||| ||||||||||||| |||| |||||||||| ||||    
T  52191314 tgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctc 52191391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 7e-51; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 39249875 - 39250054
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||| |||||| || || ||||||||||||         
T  39249875 tagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttcatctcttctttc 39249974  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39249975 aatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 39250054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 34307150 - 34307331
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||| ||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||| ||||         
T  34307150 tagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatatcttctttc 34307249  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 181  Q
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  34307250 aatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctcca 34307331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 2509194 - 2509028
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||| ||||||||||||| ||||||||  || |||||||||||||||||||||||||| ||||| ||||||||||||       |||||||    
T  2509194 tttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgttttt 2509095  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
     ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  2509094 gccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 46901747 - 46901926
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||||| |||||||||||   |||||||||||| ||||||||   | |||||| |||||||||||||||||||||||||| ||||||||||||         
T  46901747 tagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttctttt 46901846  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  46901847 aatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 19258685 - 19258863
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctcttt----- 102  Q
    |||||| | ||||| ||||| | || ||||||||||||||| ||  |  ||||||| |||||| |||||| |||| ||||| |||||||||||||         
T  19258685 tagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctcttttttca 19258784  T
Q  103 --gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      |||||| |||| |||||||||| | ||||||||||||| |||||||||||||| |||||||| |||||||| |||||    
T  19258785 atgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctc 19258863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 10147043 - 10146971
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 174  Q
    ||||||| |||| |||||||| |||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  10147043 tgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 28647531 - 28647353
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | ||||| ||||| | || ||||||| ||||||| ||  |  ||||||| |||||| |||||| |||| ||||| ||||||||| ||          
T  28647531 tagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctattctttca 28647432  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| |||  | |||||||| ||||||||||||||| | ||||||| |||| || |||||||||||||| |||||    
T  28647431 atgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 29099893 - 29099821
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
    |||||||  ||| ||||||||||||||||||  || |||| |||||||||| ||||| ||||| ||||||||||    
T  29099893 tgtttttgtcacatgtcacaaatgtgtgtggacgt-aaagagtgtatgccatctaaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 3986918 - 3987096
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    ||||||||||||||||||||    ||||||| ||||||||||||  |||||||| |||||||||||||||||| |||| || ||||||||||||          
T  3986918 tagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttcatctcttctttca 3987017  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3987018 atgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3987096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 3118059 - 3118238
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||||| ||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||| ||||| |||| |||| ||         
T  3118059 tagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttttatctattctttc 3118158  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  3118159 aatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctc 3118238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 13697746 - 13697569
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||| |||||||||||||||  ||||||||||||||||||| ||   | |||||||||||||||| ||||||||||||||| ||||||||||||          
T  13697746 tagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttcatctcttctttca 13697647  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     |||||||||||||| |||||||||||| | |||||||||||||| ||| || ||||||||||| ||||||||||||||    
T  13697646 atgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 14023112 - 14022934
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | ||||| ||||||| |  ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| || |||||||||          
T  14023112 tagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtcatctcttctttca 14023013  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  14023012 atgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 15345672 - 15345848
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||||| ||||||||||||  ||||||||||||| |||||||  ||| |||| |||||||| | ||||||||||||||  ||||||||| ||          
T  15345672 tagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttcatcttttctttca 15345771  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| ||||||||||||||  ||| |||||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  15345772 atgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctc 15345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 24208622 - 24208444
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||||| ||||| ||||||| || || |||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||||||||||||          
T  24208622 tagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttcatctcttctttca 24208523  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||| |||| | ||||||||||||||||||||||||  |||||| ||||||| ||||||| |||||||| |||||    
T  24208522 atgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 26972215 - 26972394
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| |||||||||||          
T  26972215 tagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctctcctttc 26972314  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26972315 aatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 26972394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 28307507 - 28307686
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||||| ||||||||||||| |||||||||||||| || | ||  ||||||||||||||||||||||||||||||||||| ||||||||||||         
T  28307507 tagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttttcatctcttctttc 28307606  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  28307607 aatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 36346577 - 36346755
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||| ||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||  ||||||||||||         
T  36346577 tagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-ttttcatctcttctttc 36346675  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36346676 aatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 36346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 31148459 - 31148296
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||||||||||| |||||  ||||||||| | ||  |  |||||||||||||||||||||||||||||||||||||||||||||       |||||||     
T  31148459 tttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttg 31148360  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 173  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31148359 ccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 30887869 - 30887700
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||||||||||  ||||| |||||||||||||||   ||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||     
T  30887869 tttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttg 30887770  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    | ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  30887769 ctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 42220984 - 42221154
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||||||||||||||| |||||| ||  ||||||||| |||||||| ||||||||||||||||| |||| || ||||       |||||||    
T  42220984 tttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttttatatcttctttcaatgttttt 42221083  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     |||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  42221084 gccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 34828243 - 34828069
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||||| |||||||||||||||||||| ||||||||| | ||  |||||||||||||||||||||||||||||||| |  ||||||||||||          
T  34828243 tagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttcatctcttctttca 34828144  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 176  Q
     ||||||| ||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||||||||    
T  34828143 atgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 7699904 - 7700074
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||| |||||||       |||||||    
T  7699904 tttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgttttt 7700003  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700004 gccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 7700102 - 7700272
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||| |||||||       |||||||    
T  7700102 tttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgttttt 7700201  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700202 gccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 7700300 - 7700470
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||| |||||||       |||||||    
T  7700300 tttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgttttt 7700399  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700400 gccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 7700498 - 7700668
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||| |||||||       |||||||    
T  7700498 tttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgttttt 7700597  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700598 gccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 34108596 - 34108426
Alignment:
Q  17 tttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||  ||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||    
T  34108596 tttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttcattcaatgttttt 34108497  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||  |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  34108496 gtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 45782696 - 45782851
Alignment:
Q  32 ttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 123  Q
    |||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||  |||||||||||||    
T  45782696 ttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaa 45782795  T
Q  124 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    ||||||||||||||||| | ||||||||||||||  ||||| ||||||||||||||    
T  45782796 tgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 5811176 - 5811356
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt------ 101  Q
    |||||| | ||||| ||||||| |  ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||||||||||||          
T  5811176 tagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttca 5811275  T
Q  102 -tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 181  Q
     ||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||| | ||||| |||||||| |||||||    
T  5811276 atgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctcca 5811356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 23980262 - 23980137
Alignment:
Q  55 ggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 147  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||||||       ||||||| |||| |||||||||||||||||||||||||||||||||    
T  23980262 ggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgta 23980163  T
Q  148 tgccacctaagatggttcatgtataa 173  Q
    ||||||||| | ||||| ||||||||    
T  23980162 tgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 13108325 - 13108148
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctcttt----- 102  Q
    |||||| | ||||| |||||||  | ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||| ||||||||          
T  13108325 tagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-catctcttctttca 13108227  T
Q  103 --gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  13108226 acgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 21807364 - 21807509
Alignment:
Q  37 tacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtg 129  Q
    ||||||||| || ||  ||||||||||||||||| |||| | ||||||| |||||||||||||||       | ||||| |||| | |||||||| ||||    
T  21807364 tacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtg 21807463  T
Q  130 tgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  21807464 tgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 36957561 - 36957447
Alignment:
Q  54 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 146  Q
    |||||||||||||||||||||| | || |||| |||||||||||||||       | |||||  |||||||||||||| ||| ||| |||||||||||||    
T  36957561 gggtattttagtaattttacattacattatcatccattttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgt 36957462  T
Q  147 atgccacctaagatg 161  Q
    |||||||||||||||    
T  36957461 atgccacctaagatg 36957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 38321086 - 38321014
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 174  Q
    ||||||| |||| |||||||| ||| ||||||||| |||  |||||||||||||||||||||| |||||||||    
T  38321086 tgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 15020408 - 15020282
Alignment:
Q  57 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 149  Q
    |||||||||||||| |||||||||| |||||| ||| | ||||||       ||||||| |||  |||||||||||||||  ||||||||||| ||||||    
T  15020408 tattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatgtgtg--ggtgtaaaaggttgtatg 15020312  T
Q  150 ccacctaagatggttcatgtataagagctc 179  Q
    ||||||| | ||||| |||||||| |||||    
T  15020311 ccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 46475203 - 46475109
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctggg-tattttagtaattttacatcatatcatcacccattttcatctctt 101  Q
    |||||| | ||||| ||||||| || ||||||| | ||||| || |||| |||||||||||||| |||||| ||| |||||| ||||||||||||    
T  46475203 tagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcaccccttttcatctctt 46475109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 29953584 - 29953665
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcaccc 88  Q
    |||||| | ||||||||||||  |||||||| ||  |||||||||  || ||||| ||||||||||||||||||||||||||    
T  29953584 tagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 20086690 - 20086784
Alignment:
Q  57 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggt 144  Q
    |||||||||||||| |||||| |||||||||| |||| |||||||       ||||||| |||  |||| ||||||| |||||||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagggt 20086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 29953692 - 29953661
Alignment:
Q  114 gtgtcacaaatgtgtgtgggtgtaaaagggtg 145  Q
    ||||||||||||||||||||||||||||||||    
T  29953692 gtgtcacaaatgtgtgtgggtgtaaaagggtg 29953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 39371106 - 39370927
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||         
T  39371106 tagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttc 39371007  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39371006 aatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 40887954 - 40888133
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||| |||||||||||||| || ||||   |||||||||||||||||||||||||||| ||||| ||||||||||||         
T  40887954 tagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttttcatctcttctttc 40888053  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  40888054 aatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctc 40888133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 1815655 - 1815807
Alignment:
Q  34 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgt 126  Q
    |||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||| ||||||||||||||| |    
T  1815655 atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatat 1815754  T
Q  127 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1815755 gtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctc 1815807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 2237455 - 2237276
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||  |||||||||||||| | |||||  |||||||| |||||||||||||||||||||||||| ||||||||||||         
T  2237455 tagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttc 2237356  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  2237355 aatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 13347307 - 13347128
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    |||||| | ||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||| | ||||||||| ||         
T  13347307 tagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactctttttcatctattctttc 13347208  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  13347207 aatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctc 13347128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 9408058 - 9408230
Alignment:
Q  15 catttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttt 106  Q
    ||||||||||||||  |||||||||||||| || ||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||    
T  9408058 catttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttt 9408157  T
Q  107 ttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    || |||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  9408158 ttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagagctc 9408230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 27553385 - 27553564
Alignment:
Q  7 atagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    ||||||| | ||||||||||||| ||||||||||||| |||| ||  | |||||||||||||||||||||| || ||||||  ||||| ||||||         
T  27553385 atagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctcttctttc 27553484  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  27553485 aatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctc 27553564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 14831714 - 14831555
Alignment:
Q  17 tttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||  |||||||||||||| | |||||  |||||||| | |||||||||||||||||||||||| ||||||||||||       |||||||    
T  14831714 tttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttttcatctcttctttcaatgttttt 14831615  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatg 168  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14831614 gccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 33404550 - 33404629
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 181  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  33404550 tgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctcca 33404629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 31800727 - 31800595
Alignment:
Q  17 tttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttta 109  Q
    ||||||||||||| ||| |||||||||||| | ||  ||||||||||||||||||||||||||||||||||| ||||||||| ||       | |||||     
T  31800727 tttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttg 31800628  T
Q  110 ccacgtgtcacaaatgtgtgtgggtgtaaaagg 142  Q
    |||||||||| ||||||||||||||||||||||    
T  31800627 ccacgtgtcataaatgtgtgtgggtgtaaaagg 31800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 17225449 - 17225319
Alignment:
Q  54 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 146  Q
    ||||||||||||||||| |||||| |||||||||  ||||||||||||       |||||||  ||| ||||||||||||||||||||||||||  | ||    
T  17225449 gggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--gagt 17225352  T
Q  147 atgccacctaagatggttcatgtataagagctc 179  Q
    |||||||||||  ||||||||||||||||||||    
T  17225351 atgccacctaaagtggttcatgtataagagctc 17225319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 42683779 - 42683684
Alignment:
Q  7 atagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt 101  Q
    ||||||||| ||||||||||||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||| || || ||||||||||||    
T  42683779 atagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttttcatctctt 42683684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 4300555 - 4300734
Alignment:
Q  7 atagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt----- 101  Q
    ||||||||| ||||| ||||| | || ||||||||| ||||| ||  || ||||||| |||||| |||||| |||| ||||  |||| |||||||         
T  4300555 atagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccattttttatctcttatttc 4300654  T
Q  102 --tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
      ||||||| |||  |||||||||| ||||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  4300655 aatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctc 4300734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 19596181 - 19596258
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 179  Q
    ||||||| |||| ||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  19596181 tgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 175
Target Start/End: Original strand, 19124532 - 19124657
Alignment:
Q  55 ggtattttagtaattttacatcatatcatcacccattttcatctctt------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 148  Q
    ||||||||||||||||||||||||||||||||    |||||||||||      ||||||| ||||  ||||||| ||||||||||||| |||  ||||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttctttaatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtat 19124630  T
Q  149 gccacctaagatggttcatgtataaga 175  Q
    |||| ||||||| || |||||||||||    
T  19124631 gccatctaagatagtccatgtataaga 19124657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 41003915 - 41004031
Alignment:
Q  60 tttagtaattttacatcatatcatcacccattttcatctctttgt------ttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccac 153  Q
    |||||||||||||||||| ||||||| || |||| || ||||| |      |||| |||| ||||| |||||||| || |||||||||||||||||||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttatatctttttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccac 41004014  T
Q  154 ctaagatggttcatgta 170  Q
    ||||  |||||||||||    
T  41004015 ctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 12164328 - 12164254
Alignment:
Q  102 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 176  Q
    ||||||| |||| || ||||| |||||||| || | ||||  ||| |||||||||||||||||||||||||||||    
T  12164328 tgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataagag 12164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 97; Significance: 6e-48; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 6888 - 6722
Alignment:
Q  17 tttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttttt 108  Q
    ||||||||||||  ||||||||||||| ||||||||  || ||||| |||||||||||||||||||||||||| ||||||||||||       |||||||    
T  6888 tttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttttt 6789  T
Q  109 accacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6788 gccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 72; Significance: 5e-33; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 87175 - 87350
Alignment:
Q  8 tagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatat--catcacccattttcatctctt---- 101  Q
    |||||| | |||||||||||||  ||||||||||||||||| ||  ||||||||||||||||||| || ||||  ||||||   ||||||||||||        
T  87175 tagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttttcatctcttcttt 87274  T
Q  102 ---tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 175  Q
       ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  87275 caatgtttttgccacgtgtcacaaatgtgtgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  114 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 152  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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