View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574-INSERTION-3 (Length: 264)
Name: NF1574-INSERTION-3
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574-INSERTION-3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 28115120 - 28114881
Alignment:
| Q |
25 |
catgcatagttaagtttcaccattaaatgagaaatgacatattcgaatacatttcagtcaactgcaaatgctgaaaattgaaaaatcaaatgaataaact |
124 |
Q |
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| T |
28115120 |
catgcatagttaagtttcaccattaaataagaaatgacatattagaatacatttcagtcaactgcaaatgctgaaaattgaaaaatcaaatgaataaact |
28115021 |
T |
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| Q |
125 |
caatatatgtttagaagagcaaattattgnnnnnnntatatcaaacaataaatctctattatttaccttgtctataggaataaatcatttgaatttggat |
224 |
Q |
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| T |
28115020 |
caatatatgtttagaagagcaaattattgaaaaaaatatatcaaacaacaaatctctattatttaccttgtctataggaataaatcatttgaatttggat |
28114921 |
T |
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| Q |
225 |
atgttgccatggatgagagatctacttgaaatggtgttga |
264 |
Q |
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| T |
28114920 |
atgttgccatggatgagagatctacttgaaatggtgttga |
28114881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 28175578 - 28175344
Alignment:
| Q |
25 |
catgcatagttaagtttcaccattaaatgagaaatgacatattcgaatacatttcagtcaactgcaaatgctgaaaattgaaaaatcaaa-tgaataaac |
123 |
Q |
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| T |
28175578 |
catgcatagttgagtttcaccattaagaaggaaatgacatattagaatacatttcagtcaattgcaaatgctgaaaatggaaaaatcaaaccgaaaaaac |
28175479 |
T |
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| Q |
124 |
tcaatatatgtttagaagagcaaattattgnnnnnnntatatcaaacaataaatctctattatttaccttgtctataggaataaatcatttgaatttgga |
223 |
Q |
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| T |
28175478 |
tcaatatatgttcataagag-aaattattgaaaaaaat-tatcaaacaactaaactctaatatttaccttgtctatacaaattaaacatttgaatttgga |
28175381 |
T |
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| Q |
224 |
tatgttgcc----atggatgagagatctacttgaaat |
256 |
Q |
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| T |
28175380 |
tatgttgccatggatggatgagagatctacttgaaat |
28175344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 9832271 - 9832365
Alignment:
| Q |
164 |
atcaaacaataaatctctattatttaccttgtctataggaataaatcatttgaatttggatatgttgccatggatgagagatctacttgaaatgg |
258 |
Q |
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| T |
9832271 |
atcaaacaattgaactctattatttaccttctcgatacaaataaagcttttgaattcgaatatgttgccatggatgagagatctacttgaaatgg |
9832365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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