View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1574-INSERTION-4 (Length: 663)

Name: NF1574-INSERTION-4
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1574-INSERTION-4
NF1574-INSERTION-4
[»] chr1 (1 HSPs)
chr1 (7-661)||(16509700-16510340)


Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 7 - 661
Target Start/End: Original strand, 16509700 - 16510340
Alignment:
Q  7 aatctcaatgtggtttgcgatacacaagaatcggttatggttgaaccggttaaggttgagccggttaaggttgaaccggttaaggttgaaccagttaaac 106  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||               |||||||||||||||||||||||| ||| |||||||    
T  16509700 aatctcaatgtggtttgcgatacacaagaatcggttatggctgaaccgg---------------ttaaggttgaaccggttaaggttggaccggttaaac 16509784  T
Q  107 aaccaacattggctgaaccggtttgtgcagagaagaaaaccgtttgtgatgatgaagtggaagtgttgaaggtggtgaaagggaaagcagctgtgagtga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  16509785 aaccaacattggctgaaccggtttgtgcagagaagaaaaccgtttgtgatgatgaagtggaagtgttgaaggtggtgaaggggaaagaagctgtgagtga 16509884  T
Q  207 tgaagttagggttttgaaggtggtgaagaaggaggtagttgaggagaagaagattctgattccgaatctcgaggatggtgagtttcctgttgagcctggg 306  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||    
T  16509885 tgaagttagggttttgaaggtggtgaagaaggaggtagttgaagagaagaagatccagattccgaatcttgaggatggtgagtttcctgttgagcctggg 16509984  T
Q  307 tggtcattgttgggaaggaagattgagattgctacttctactgctaaaggagtgaggagattggttgataatgagattatttattttgattttccgaatc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  16509985 tggtcattgttgggaaggaagattgagattgctacttctactgctaaaggagtgagaagattggtggataatgagattatttattttgattttccgaatc 16510084  T
Q  407 cgcatacgtcgtataagtttcaatggattgttcgtgtctcgaccaaacgttctggagtggtactaattttatccttaaaaagttacatttttgttattgt 506  Q
    |||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||  |||||||||| |||||||||||||||||||||| ||    
T  16510085 cgcatacgtcgtataagtttcaatggatcgttcgtgtctccacaaagcgttctggagtggtatgaattttatccataaaaagttacatttttgttatggt 16510184  T
Q  507 tagagtttaaagtatgttattttcttgattgcaatgtttagaatttaaagtattttattttattgattgcaatgtttagaatgcaatgtgagattgtttt 606  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  16510185 taaagtttaaagtatgttattttcttgattgcaatgtttagaatttaaagtattttattttattgattgcaatgtttaaaatgcaatgtgaaattatttt 16510284  T
Q  607 gatgtttttgttggaagggaattgaaagtg--atatttttgttatcttggtgtgttt 661  Q
    |||||||||||||||| |||||||||||||  ||||||||||||| |||||||||||    
T  16510285 gatgtttttgttggaa-ggaattgaaagtgatatatttttgttatgttggtgtgttt 16510340  T

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