View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15740_high_1 (Length: 516)
Name: NF15740_high_1
Description: NF15740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15740_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 5366011 - 5365527
Alignment:
| Q |
18 |
acaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaatgacc |
117 |
Q |
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| T |
5366011 |
acaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaatgacc |
5365912 |
T |
|
| Q |
118 |
gaagccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagtta |
217 |
Q |
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| T |
5365911 |
gaagccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagtta |
5365812 |
T |
|
| Q |
218 |
gtccgtggacaaccttcggccttgtcgcatgcaatggcgacattttagaagccttcgaaggtgattccaagctgcacataattgatattagtaacactta |
317 |
Q |
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| T |
5365811 |
gtccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgatattagtaacactta |
5365712 |
T |
|
| Q |
318 |
ttgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgctggtggttctgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365711 |
ttgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgctggtggttctgtt |
5365612 |
T |
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| Q |
418 |
caaaaagttatgaaggaaattggtgctagaatggaaaaattcgcaagactcatgggagttccatttaaattcaacgttattcatc |
502 |
Q |
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| T |
5365611 |
caaaaagttatgaaggaaattggtgctagaatggaaaaattcgctagactcatgggagttccatttaaattcaacgttattcatc |
5365527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 292 - 491
Target Start/End: Original strand, 39987597 - 39987802
Alignment:
| Q |
292 |
cacataattgatattagtaacacttattgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaacta |
391 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||| || | |||||||||||||| || |||| ||||| |||||||| ||| |||| | |
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| T |
39987597 |
cacataattgatattagcaacacttattgcactcaatggccaacactcctcgaagcgttggccacccgctctgatgatacgcctcaccttcgtttaacca |
39987696 |
T |
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| Q |
392 |
ccatcgtcactgc------tggtggttctgttcaaaaagttatgaaggaaattggtgctagaatggaaaaattcgcaagactcatgggagttccatttaa |
485 |
Q |
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| T |
39987697 |
ctgtagtcactgcaatcagcggtggctcggtgcaaaaagtcatgaaggaaattggttcaaggatggaaaaatttgctaggcttatgggagtgccgtttaa |
39987796 |
T |
|
| Q |
486 |
attcaa |
491 |
Q |
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|||||| |
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| T |
39987797 |
attcaa |
39987802 |
T |
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