View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15740_low_2 (Length: 433)
Name: NF15740_low_2
Description: NF15740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15740_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 4 - 419
Target Start/End: Complemental strand, 2838213 - 2837798
Alignment:
| Q |
4 |
tcacatcttaatttattgagtttattccaaatacaagagttttcgcatattattcctcacaggactaacaccaataaacaaacttattaactacattaat |
103 |
Q |
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| T |
2838213 |
tcacatcttaatttattgagtttattccaaatacaagagtttttgcatattattcctcacaagactaacaccaataaacaaacttattaactacattaat |
2838114 |
T |
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| Q |
104 |
ttaattaatttgcttaatataacaaacacaaaactataaactaattgaaccatgctatgcaaccttcatttcacttcatcgttttaaattgcggtctgcg |
203 |
Q |
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| T |
2838113 |
ttaattaatttgcttaatataacaaacacaaaactataaactaattgaaccatgctatgcaaccttcatttcacttcatcgttttaaaatgcggtctgcg |
2838014 |
T |
|
| Q |
204 |
actgcactgtagcaacgatgtaaacatttcacaggtctccacaacatcatcctaattcgtaactgcaattatggtcgcatttgtcctcaatttcctgcaa |
303 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838013 |
gctgcactgtagcaatgatgtaaacatgccacaggtctccacaacatcatcctaattcgtaactgcaattatggtcgcatttgtcctcaatttcctgcaa |
2837914 |
T |
|
| Q |
304 |
tatcaaggatcgcgattcagctgtaagtgtaaccagccaccgcaatttaaaaccatatttattttcaagacatagatttcctccacctattaggagtcct |
403 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2837913 |
tatcaaggatcgcgattcagccgtaagtgtaaccagccaccgcaatttaaaaccatatttattttcaagacatagatttcctccacctattaggagtcct |
2837814 |
T |
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| Q |
404 |
acctttgacattcacc |
419 |
Q |
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| T |
2837813 |
acctttgacattcacc |
2837798 |
T |
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