View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15741_high_1 (Length: 730)
Name: NF15741_high_1
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 8 - 714
Target Start/End: Original strand, 9118926 - 9119631
Alignment:
| Q |
8 |
tgagatgaatgaatattctattgccacctgtttgacacaccaaccaacatcacaatattatgtaacaatgcactcactcctcaacctgctcatcctccca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9118926 |
tgagatgaatgaatattctattgccacctgtttgacacaccaaccaacatcacaatattatgtaacaatgcactcactcctcaacctgctcatcctccca |
9119025 |
T |
|
| Q |
108 |
tagtaataaacgcctacaccacttccacgcctcccccatcttaaatgattaatccctgaaattgacagcattttgttctctactaatcaaagagacgact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||| ||||||||||| |||||| |
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| T |
9119026 |
tagtaataaacgcctacaccacttccacgcctcccccatcctaaatgattagtccctgaaactgacaacattttgttctctgctaatcaaagatacgact |
9119125 |
T |
|
| Q |
208 |
aatctatcatttaaaactcccctccctaaccaagggtctcaccaaaacaacgtagacgactcatcactaacacaacgacttaagttatcgaagaaccaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
9119126 |
aatctatcatttaaaactcccctccccaaccaagggtctcaccaaaacaacgtagacgaatcatcactaacacaacgatttaagttatcgaagaaccaat |
9119225 |
T |
|
| Q |
308 |
tctcta-ccccaaaccgaccccatcactaatagcagtaagatttttccaccaaaccgagcctaaccttccacctacacaaatcctacctccaacctccca |
406 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9119226 |
tttctacccccaaaccgaccccatcactaatagcagtaagatttttccaccaaaccgagcctaaccttccacctacacaaatcctacctccaacctcccc |
9119325 |
T |
|
| Q |
407 |
ataacgtgccgctaaaattctattccacaacatgtctcttacaaccctcaacctccaataccacttccacaaaacagccacgttaaattcgttaattctc |
506 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
9119326 |
atatcgtgccgctaaaattctattccacaacatgtctcttaccaccctcaacctccaataccacttccgcaaaacagccacgttaaattccttaattctc |
9119425 |
T |
|
| Q |
507 |
ctaattcaatgtccttcaaattccttttgcaagatatacaagtgacgcccatccgatcaacnnnnnnnnnnnngtataaacgatatcttattaaataata |
606 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
9119426 |
ctaactcaatgtccttcaaattccttttgcaagatatacaagtgacgcccatccgatcaactttttattttttgtataaacgatatcttattaaat--ta |
9119523 |
T |
|
| Q |
607 |
ataatgttttcattaaaaaataaacgacgatagagtatatatcagtgttatctgttaacttctaaaacaaggcacgtaaattctgaatctgggtgtatat |
706 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
9119524 |
ataatgttttcattaaaaaataaacgacgatagagtatatatcagtgttatctgttaacttctaaaacaaggcacgtaaattctgtatctgggtgtatat |
9119623 |
T |
|
| Q |
707 |
tgatttat |
714 |
Q |
| |
|
|||||||| |
|
|
| T |
9119624 |
tgatttat |
9119631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 8e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 235 - 495
Target Start/End: Complemental strand, 36564025 - 36563765
Alignment:
| Q |
235 |
aaccaagggtctcaccaaaacaacgtagacgactcatcactaacacaacgacttaagttatcgaagaaccaattctctaccccaaaccgaccccatcact |
334 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||| | |||| ||||||||||| ||||||||| |||||||||||| || |||||||| ||||| ||||| |
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|
| T |
36564025 |
aaccaagggtcaaaccaaaacagcgtagatgacccgtcaccaacacaacgacctaagttatccaagaaccaattccctgccccaaacaaaccccttcact |
36563926 |
T |
|
| Q |
335 |
aatagcagtaagatttttccaccaaaccgagcctaaccttccacctacacaaatcctacctccaacctcccaataacgtgccgctaaaattctattccac |
434 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||||||| | | |
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|
| T |
36563925 |
aatagcatgaggatttttccaccaaaccgaatataaccttccacctacacaaatccaaactccaaccttcccataacgtgccgctaaaattctatacaat |
36563826 |
T |
|
| Q |
435 |
aacatgtctcttacaaccctcaacctccaataccacttccacaaaacagccacgttaaatt |
495 |
Q |
| |
|
|||| |||||| | |||||||||||||| ||||||||| ||||| ||||| ||||||| |
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|
| T |
36563825 |
gacatatctctttcctccctcaacctccaacaccacttccccaaaagagccatattaaatt |
36563765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 36564228 - 36564128
Alignment:
| Q |
8 |
tgagatgaatgaatattctattgccacctgtttgacacaccaaccaacatcacaatattatgtaacaatgcact-cactcctcaacctgctcatcctccc |
106 |
Q |
| |
|
|||||||||||||| || ||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |
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| T |
36564228 |
tgagatgaatgaatgttttattgtcacctgtctaacacaccaacctgcatcacaatattatgtaacaatgcactacactcctgaacctgctcctcctccc |
36564129 |
T |
|
| Q |
107 |
a |
107 |
Q |
| |
|
| |
|
|
| T |
36564128 |
a |
36564128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 19217630 - 19217712
Alignment:
| Q |
8 |
tgagatgaatgaatattctattgccacctgtttgacacaccaaccaacatcacaatattatgtaacaatgcact-cactcctc |
89 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||| |||||| |||||| ||| ||||||||||| ||||| ||||| |||||||| |
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|
| T |
19217630 |
tgagatgaatgaatattccattgacacatgtctgacactccaacctacaacacaatattattcaacaaagcactgcactcctc |
19217712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 19217804 - 19217922
Alignment:
| Q |
170 |
tgacagcattttgttctctactaa-tcaaagagacgact-aatctatcatttaaaactcccctccctaaccaagggtctcaccaaaacaacgtagacgac |
267 |
Q |
| |
|
||||| |||||||||||| ||||| ||||| | ||||| ||| |||| || ||||||||| | | ||||||||||| |||||||||| ||||||| || |
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|
| T |
19217804 |
tgacaccattttgttctcaactaaatcaaaaaatcgactgaatttatccttcaaaactccctcctccaaccaagggtcccaccaaaacagcgtagacaac |
19217903 |
T |
|
| Q |
268 |
tcatcactaacacaacgac |
286 |
Q |
| |
|
||||||| || ||||||| |
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|
| T |
19217904 |
acatcactgacgcaacgac |
19217922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 32153716 - 32153773
Alignment:
| Q |
208 |
aatctatcatttaaaactcccctccctaaccaagggtctcaccaaaacaacgtagacga |
266 |
Q |
| |
|
|||||||| ||||||||||||| | |||| ||||||||||||||||| || |||||||| |
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|
| T |
32153716 |
aatctatcctttaaaactcccc-ctctaatcaagggtctcaccaaaataatgtagacga |
32153773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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