View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15741_high_14 (Length: 271)
Name: NF15741_high_14
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 64 - 258
Target Start/End: Complemental strand, 4354694 - 4354500
Alignment:
| Q |
64 |
gagaaaaaccaaaataaccaaagtagttacatagactgctacaatagtttgcagtaactaacatctaacataactaaatcataagaagcatacttttgta |
163 |
Q |
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| T |
4354694 |
gagaaaaaccaaaataaccaaagcagttacatagactgctacaatagtttgcagtaactaacatctaacataactaaatcataagaagcatacttttgta |
4354595 |
T |
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| Q |
164 |
gtttgtacacccccacgagttcaaggtgggtgaggaaatgaagagagctattagctatcttagcacattgagcttgtttttgagatgaatatatt |
258 |
Q |
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| T |
4354594 |
gtttgtacacccccacaagttcaaggtgggtgaggaaatgaagagagctattagctatcttagcacattgagcttgtttttgagatgaatatatt |
4354500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 4354892 - 4354849
Alignment:
| Q |
16 |
atgaagatacataatacgattaataataatacttgatatttaaaaaa |
62 |
Q |
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| T |
4354892 |
atgaagatacataatacgattaat---aatacttgatatttaaaaaa |
4354849 |
T |
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