View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15741_high_16 (Length: 257)
Name: NF15741_high_16
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 51739761 - 51739984
Alignment:
| Q |
21 |
attgattgtagaaatgggttgcttattggtgtttaatatgatggttaatacgaagatggatgataagaagtataatgcagcacaagcttcaaagggttta |
120 |
Q |
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| T |
51739761 |
attgattgtagaaatgggttgcttattggtgtttaatatgatggttaatacgaagatggatgataagaagtataatgcggcacaagcttcaaagggttta |
51739860 |
T |
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| Q |
121 |
agttgtctcattcttacaagttttgtggttcttatgaatagatacttagccatttggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctg |
220 |
Q |
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| T |
51739861 |
agttgtctcattcttacaagttttgtggttcttatgaatagatacttagccatttggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctg |
51739960 |
T |
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| Q |
221 |
aactattattcatcctctttattc |
244 |
Q |
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| T |
51739961 |
aactattattcatcctctttattc |
51739984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 10200578 - 10200643
Alignment:
| Q |
163 |
tacttagccatttggttaaatacaagaaatagaaaccaaaagtacctaaaagcccctgaactatta |
228 |
Q |
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| T |
10200578 |
tacttagccgtttggttaaactcaagaaatagaaaccaaaaatacctaaaagctactgaactatta |
10200643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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