View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15741_high_2 (Length: 643)
Name: NF15741_high_2
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 116 - 627
Target Start/End: Complemental strand, 37547922 - 37547411
Alignment:
| Q |
116 |
cagtgttgttgtcacgtgctctttggttgatgtcgtcattatgctcctttgattgtttgccgtcgttgtctcaattcatattccttagcttgtatcactt |
215 |
Q |
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| T |
37547922 |
cagtgttgttgtcacgtgctctttggttgatgtcgtcattatgctcctttgattgtttgccgtcgttgtctcaattcatattccttagcttgcatcactt |
37547823 |
T |
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| Q |
216 |
ccgttatttctttcaaaccaaatggaggatatgataaaatcaaataggaccaactaacattcacatttattacccgatcgcaatcaatattatacgaaat |
315 |
Q |
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| T |
37547822 |
ccgttatttctttcaaaccaaatggaggatatgataaaatcaaataggaccaactaacattcacatccattacccgatcgcaatcaatattatacgaaat |
37547723 |
T |
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| Q |
316 |
ccaactcccaagtttacacaaccttctcgcagtctcgaagtgcatgtaacgtagttttgggtaatatactagagatataggacacaaactggaggatgca |
415 |
Q |
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| T |
37547722 |
ccaactcccaagtttacacaacattctcgcagtctcgaagtgcatgtaacgtagttttgggtaatatactagagatataggacacaaactggaggatgca |
37547623 |
T |
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| Q |
416 |
cgatatatgttaagcctaaattcatttttaatttttaagaatattccacaagaggaacatgcttctaaattggatcacctccatttggtaccttttaaga |
515 |
Q |
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| T |
37547622 |
caatatatgttaagcctaaattcatttttaatttttaagaatattccacaagaggaacatgcttctaaattggatcacctccatttggtaccttttaaga |
37547523 |
T |
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| Q |
516 |
aaatttcataatattatatagagtaagttctaccttcaaacctctgaataattgaatgtagaacttactctaagtatgagtgtggtagatatattataat |
615 |
Q |
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| T |
37547522 |
aaatttcataatattatatagagtaagttctaccttcaaacctctgaataattgaatgtagaacttactttaagtatgagtgtggtagatatattataat |
37547423 |
T |
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| Q |
616 |
gatcagaatatt |
627 |
Q |
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| T |
37547422 |
gatcagaatatt |
37547411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 525 - 559
Target Start/End: Complemental strand, 37547416 - 37547382
Alignment:
| Q |
525 |
aatattatatagagtaagttctaccttcaaacctc |
559 |
Q |
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| T |
37547416 |
aatattatatagagtaagttctaccttcaaacctc |
37547382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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