View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15741_high_6 (Length: 442)
Name: NF15741_high_6
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 30069420 - 30069683
Alignment:
| Q |
18 |
aaatgagtgtgattaaagtccttgatatattaaatccgctcatgtggagagatatttgaatagtatatacatggggcttgcgaattcttttttatttggg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30069420 |
aaatgagtgtgattaaagtccttgatatattaaatccgctcatgtggagagatatttgaatagtatatacatggggcttgcaaattcttttttatttggg |
30069519 |
T |
|
| Q |
118 |
acttttggtatagatgcagaactagtgtttttgatgggttttgagcttgcttgatcttggattaccaagaaacaaaaactaaagctgtaatcgtaagcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30069520 |
acttttggtatagatgcagaactagtgtttttgatgggttttgagcttgcttgatcttggattaccaagaaacaaaaactaaagctgtaatcataagca- |
30069618 |
T |
|
| Q |
218 |
agacacctttcagacactgactcttctcggacacaccttgaacatgtgtcaaacacctcttattggtgttcaatt |
292 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30069619 |
----------cagacactgacacttctcggacacaccttgaacatgtgtcaaacacctcttattggtgttcaatt |
30069683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 293 - 429
Target Start/End: Original strand, 30069720 - 30069868
Alignment:
| Q |
293 |
ttatacctgctcctagccatacacttctcaaactccctaaccttagattatatcgaatactttttgagacaaatacaacaatgacgt------------c |
380 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
30069720 |
ttatacctgctcctagccatacacttctcgaactccctaaccttagattgtatcgaatgctttttgagacaaatacaacaatgacgtctcattattaggc |
30069819 |
T |
|
| Q |
381 |
tcattatcataggactaactacttgttattaaagacatgattcatcttc |
429 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30069820 |
tcattatcataggactaattacttgttattaaagacatgattcatcttc |
30069868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University