View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15741_low_11 (Length: 365)
Name: NF15741_low_11
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_low_11 |
 | |
|
| [»] scaffold0164 (2 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 31195270 - 31194939
Alignment:
| Q |
16 |
atgaacaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
31195270 |
atgaacaagcatattgcagcgattccaagacttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatcaaatttgttctttgct |
31195171 |
T |
|
| Q |
116 |
ccaaaagctcgtctcatggatcgagccctagcatgacaattcggatgtgttaaaattggagttactgcaacataagagggaccatcaaaaggatgaacat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
31195170 |
ccaaaagctcgtctcatggatcgagccctagcatgacaattcggatgtgttaaaattggagtgactgcaacataagagggactatcaaaaagatgaacat |
31195071 |
T |
|
| Q |
216 |
gataaacagtactaggttgttcataatgattaagaattagaggaatcaaattttcaccaccgttcgcggcggcattagctctgatactgtcatgaagttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31195070 |
gataaacagtactaggttgttcataatgatcaagaattagaggaatcaaatttccatcaccgttcgcagcggcattagctctgatactgtcatgaagttc |
31194971 |
T |
|
| Q |
316 |
atcatcaacataatgaaaaccatagaaattgc |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31194970 |
atcatcaacataatgaaaaccatagaaattgc |
31194939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 31213885 - 31213554
Alignment:
| Q |
16 |
atgaacaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
31213885 |
atgaacaagcatattgcagcgattccaagacttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatcaaatttgttctttgct |
31213786 |
T |
|
| Q |
116 |
ccaaaagctcgtctcatggatcgagccctagcatgacaattcggatgtgttaaaattggagttactgcaacataagagggaccatcaaaaggatgaacat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
31213785 |
ccaaaagctcgtctcatggatcgagccctagcatgacaattcggatgtgttaaaattggagtgactgcaacataagagggactatcaaaaagatgaacat |
31213686 |
T |
|
| Q |
216 |
gataaacagtactaggttgttcataatgattaagaattagaggaatcaaattttcaccaccgttcgcggcggcattagctctgatactgtcatgaagttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31213685 |
gataaacagtactaggttgttcataatgatcaagaattagaggaatcaaatttccatcaccgttcgctgcggcattagctctgatactgtcatgaagttc |
31213586 |
T |
|
| Q |
316 |
atcatcaacataatgaaaaccatagaaattgc |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31213585 |
atcatcaacataatgaaaaccatagaaattgc |
31213554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 31187210 - 31186944
Alignment:
| Q |
16 |
atgaacaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
31187210 |
atgaacaagcatattgcagcgattccaagacttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatcaaatttgttctttgct |
31187111 |
T |
|
| Q |
116 |
ccaaaagctcgtctcatggatcgagccctagcatgacaattcggatgtgttaaaattggagttactgcaacataagagggaccatcaaaaggatgaacat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
31187110 |
ccaaaagctcgtctcatggatcgagccctagcatgacaattcggatgtgttaaaattggagtgactgcaacataagagggactatcaaaaagatgaacat |
31187011 |
T |
|
| Q |
216 |
gataaacagtactaggttgttcataatgattaagaattagaggaatcaaattttcaccaccgttcgc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
31187010 |
gataaacagtactaggttgttcataatgatcaagaattagaggaatcaaatttccatcaccgttcgc |
31186944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 20044660 - 20044774
Alignment:
| Q |
29 |
ttgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaaaagctcgtc |
128 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||||||| |||| | ||| | || || |||||||| ||||| ||||||||||||||||| ||||||| || |
|
|
| T |
20044660 |
ttgcaacggttccacgccttgaaactaggatcaaactccgtgggaaccggaatggatccatcaacgaaatcgaatttgttcttcgctcccaaagctcttc |
20044759 |
T |
|
| Q |
129 |
tcatggatcgagccc |
143 |
Q |
| |
|
||| || ||||||| |
|
|
| T |
20044760 |
gcatcgaacgagccc |
20044774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 53976414 - 53976309
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||||||||| |||| | |||| | ||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
53976414 |
acaagcatgttgcaacgattccaagccttgaaatttggatcaaaatccgttggaacagggatagatccatccacaaaatcaaacttgttcttcgctccaa |
53976315 |
T |
|
| Q |
120 |
aagctc |
125 |
Q |
| |
|
||||| |
|
|
| T |
53976314 |
gagctc |
53976309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 52771345 - 52771233
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||||||||||||||| || ||| ||| | || || ||||| |||||||| || |||||||| |||| | |
|
|
| T |
52771345 |
acaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatccacaaaatcaaacttgttctttcctccta |
52771246 |
T |
|
| Q |
120 |
aagctcgtctcat |
132 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
52771245 |
aagctcttctcat |
52771233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 49642886 - 49642991
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||||||||| |||| | |||| | ||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
49642886 |
acaagcatgttgcaacgattccaagccttgaaatttggatcaaaatccgttggaacagggatagatccatccacaaaatcaaacttgttcttcgctccaa |
49642985 |
T |
|
| Q |
120 |
aagctc |
125 |
Q |
| |
|
||||| |
|
|
| T |
49642986 |
gagctc |
49642991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 51589680 - 51589566
Alignment:
| Q |
29 |
ttgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaaaagctcgtc |
128 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||| || | | ||| | || || |||||||| ||||| ||||||||||||||||| || |||| || |
|
|
| T |
51589680 |
ttgcagcggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatcaacgaaatcgaatttgttcttcgctcccaacgctcttc |
51589581 |
T |
|
| Q |
129 |
tcatggatcgagccc |
143 |
Q |
| |
|
||| || ||||||| |
|
|
| T |
51589580 |
acatcgaacgagccc |
51589566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 9798699 - 9798747
Alignment:
| Q |
16 |
atgaacaagcatattgcagcgattccaagccttgaaacttggatcaaac |
64 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
9798699 |
atgaataagcatgttgcactgattccaagccttaaaacttggatcaaac |
9798747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 18578 - 18683
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||||||||| | || | |||| | ||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
18578 |
acaagcatgttgcaacgattccaagccttgaaatttggatcaaaatcagttggaacagggatagatccatccacaaaatcaaacttgttcttcgctccaa |
18677 |
T |
|
| Q |
120 |
aagctc |
125 |
Q |
| |
|
||||| |
|
|
| T |
18678 |
gagctc |
18683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 28958 - 29063
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||| |||| | |||| | ||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
28958 |
acaagcatgttgcaacgattccaagccttgaagtttggatcaaaatccgttggaacagggatagatccatccacaaaatcaaacttgttcttcgctccaa |
29057 |
T |
|
| Q |
120 |
aagctc |
125 |
Q |
| |
|
||||| |
|
|
| T |
29058 |
gagctc |
29063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 15191396 - 15191291
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||||||||| | || | |||| | ||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
15191396 |
acaagcatgttgcaacgattccaagccttgaaatttggatcaaaatctgttggaacagggatagatccatccacaaaatcaaacttgttcttcgctccaa |
15191297 |
T |
|
| Q |
120 |
aagctc |
125 |
Q |
| |
|
||||| |
|
|
| T |
15191296 |
gagctc |
15191291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 18252241 - 18252139
Alignment:
| Q |
23 |
agcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaaaag |
122 |
Q |
| |
|
||||||||||| ||||||||||| |||||| |||||||||| |||| | || | | ||||| ||||| |||||||| || ||||||||| |||||| || |
|
|
| T |
18252241 |
agcatattgcaacgattccaagctttgaaatttggatcaaaatccgttggaataggaatagatccatccacaaaatcaaacttgttcttccctccaagag |
18252142 |
T |
|
| Q |
123 |
ctc |
125 |
Q |
| |
|
||| |
|
|
| T |
18252141 |
ctc |
18252139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 13986305 - 13986193
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||||||||||||||| || ||| ||| | || || ||||| |||||||| || |||||||| |||| | |
|
|
| T |
13986305 |
acaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatccacaaaatcaaacttgttctttcctccta |
13986206 |
T |
|
| Q |
120 |
aagctcgtctcat |
132 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
13986205 |
aagctcttctcat |
13986193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 97612 - 97724
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||||||||||||||| || ||| ||| | || || ||||| |||||||| || |||||||| |||| | |
|
|
| T |
97612 |
acaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatccacaaaatcaaacttgttctttcctccta |
97711 |
T |
|
| Q |
120 |
aagctcgtctcat |
132 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
97712 |
aagctcttctcat |
97724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 250729 - 250841
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||||||||||||||| || ||| ||| | || || ||||| |||||||| || |||||||| |||| | |
|
|
| T |
250729 |
acaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatccacaaaatcaaacttgttctttcctccta |
250828 |
T |
|
| Q |
120 |
aagctcgtctcat |
132 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
250829 |
aagctcttctcat |
250841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 16254835 - 16254723
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| || || |||||||| || ||||||||||||||||| || ||| ||| | || || ||||| |||||||| || |||||||| |||| | |
|
|
| T |
16254835 |
acaagcatgttacaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatccacaaaatcaaacttgttctttcctccta |
16254736 |
T |
|
| Q |
120 |
aagctcgtctcat |
132 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
16254735 |
aagctcttctcat |
16254723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 14611716 - 14611664
Alignment:
| Q |
83 |
gaaccatcaacaaaatctaatttgttcttcgctccaaaagctcgtctcatgga |
135 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14611716 |
gaaccatcaacaaacttcaatttgttcttcgcgccaaaagctcgaatcatgga |
14611664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 26129555 - 26129443
Alignment:
| Q |
20 |
acaagcatattgcagcgattccaagccttgaaacttggatcaaaccccgtagaaacatgtatagaaccatcaacaaaatctaatttgttcttcgctccaa |
119 |
Q |
| |
|
|||||||| || || |||||||| || ||||||||||||||||| || ||| ||| | || || ||||| |||||||| || |||||||| |||| | |
|
|
| T |
26129555 |
acaagcatgttacaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatccacaaaatcaaacttgttctttcctccta |
26129456 |
T |
|
| Q |
120 |
aagctcgtctcat |
132 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
26129455 |
aagctcttctcat |
26129443 |
T |
|
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