View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15741_low_16 (Length: 297)
Name: NF15741_low_16
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 4566164 - 4566420
Alignment:
| Q |
23 |
acacgaacattaatagtaaaattatcctaacttgtccttgaacattccccattagtggcacaggaaaaagattctacataaatgatttaactttaagctt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4566164 |
acacgaacattaatagtaaaattatcctaacttgtccttgaacattccccattagtggcacaggaaaaagattctacataaatgatttaactttaagttt |
4566263 |
T |
|
| Q |
123 |
gtcgtccggtaaaatttgcatatatcgtcataaaataaaataaaatccagtgaagggccctgtctcaattatcttcaagtaattattgttttttattatt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4566264 |
gtcgtccggtaaaatttgcatatatcgtcataaaataaaataaaatccagtgaagggccctgtctcaattatcttcaagtaattattgttttttattatt |
4566363 |
T |
|
| Q |
223 |
tgaaatggagtttcaagtattctcaaatatgacttcaattacaatcggtggaccggc |
279 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4566364 |
taaaatggagtttcaagtattctcaaatatgacttcaattacaatcggtggaccggc |
4566420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University