View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15741_low_21 (Length: 238)

Name: NF15741_low_21
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15741_low_21
NF15741_low_21
[»] chr3 (3 HSPs)
chr3 (26-161)||(45159103-45159237)
chr3 (10-161)||(52403773-52403922)
chr3 (10-59)||(33613069-33613118)
[»] chr1 (3 HSPs)
chr1 (19-161)||(5384152-5384292)
chr1 (13-135)||(37034272-37034394)
chr1 (10-59)||(32364860-32364909)
[»] chr5 (1 HSPs)
chr5 (13-161)||(389070-389217)
[»] chr7 (4 HSPs)
chr7 (77-161)||(10198883-10198967)
chr7 (83-161)||(16216464-16216542)
chr7 (13-58)||(10198965-10199010)
chr7 (26-62)||(16216409-16216445)
[»] chr4 (4 HSPs)
chr4 (81-161)||(12704078-12704158)
chr4 (13-138)||(25232007-25232131)
chr4 (75-138)||(55676012-55676075)
chr4 (10-62)||(12704008-12704060)
[»] chr8 (2 HSPs)
chr8 (13-161)||(39375711-39375858)
chr8 (19-61)||(39025232-39025274)
[»] chr6 (2 HSPs)
chr6 (18-50)||(18175519-18175551)
chr6 (18-50)||(18224250-18224282)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 45159237 - 45159103
Alignment:
Q  26 tgactcggtcggttttttgagtcaatccggtttagtannnnnnnnnnncaatttctgtcataattagtcattagacacacgaattaatactaaataatgc 125  Q
    |||||||| ||||||| ||||||||||||||||||||           ||||||||||||||||||||| |||  |||||||||||| ||||| ||||||    
T  45159237 tgactcggccggttttatgagtcaatccggtttagtaattttttttt-caatttctgtcataattagtcgttaagcacacgaattaagactaattaatgc 45159139  T
Q  126 ttggtttaatacatttaataccgataaatgcttcaa 161  Q
    ||||||||||||||||||||||||||||||||||||    
T  45159138 ttggtttaatacatttaataccgataaatgcttcaa 45159103  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 52403773 - 52403922
Alignment:
Q  10 aaccggttaaaaccgatgactcggtcggttttttgagtcaatccggtttagtannnnnnnnnnncaatttctgtcataattagtcattagacacacgaat 109  Q
    |||||||  |||||||||||||||  |||||| ||||||||||||||||||||           |||||| ||||||||||||||||||  |||||||||    
T  52403773 aaccggtggaaaccgatgactcggctggttttctgagtcaatccggtttagtaatttttttt--caatttttgtcataattagtcattaagcacacgaat 52403870  T
Q  110 taatactaaataatgcttggtttaatacatttaataccgataaatgcttcaa 161  Q
    ||||||||| ||||| | |||||||||||||||||| |||||||||||||||    
T  52403871 taatactaattaatgttcggtttaatacatttaatatcgataaatgcttcaa 52403922  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 33613069 - 33613118
Alignment:
Q  10 aaccggttaaaaccgatgactcggtcggttttttgagtcaatccggttta 59  Q
    |||||||||||||||| ||||||| |||||||| ||||||| ||||||||    
T  33613069 aaccggttaaaaccgacgactcggccggtttttagagtcaaaccggttta 33613118  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 5384152 - 5384292
Alignment:
Q  19 aaaccgatgactcggtcggttttttgagtcaatccggtttagtannnnnnnnnnncaatttctgtcataattagtcattagacacacgaattaatactaa 118  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||           |||||| ||||||||||||||||||  ||||| |||||| |||||    
T  5384152 aaaccggtgactcggccggttttctgagtcaatccggtttagtaatttttttt--caatttttgtcataattagtcattaagcacacaaattaacactaa 5384249  T
Q  119 ataatgcttggtttaatacatttaataccgataaatgcttcaa 161  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  5384250 ttaatgcttggtttaatacatttaataccgataaatgcttcaa 5384292  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 37034272 - 37034394
Alignment:
Q  13 cggttaaaaccgatgactcggtcggttttttgagtcaatccggtttagtannnnnnnnnnncaatttctgtcataattagtcattagacacacgaattaa 112  Q
    |||| ||||||| |||||||| ||||||| ||||||||||||||||||||           |||||||||||||||||||||||||  | ||||||||||    
T  37034272 cggtaaaaaccggtgactcggccggttttctgagtcaatccggtttagtaaatttttttttcaatttctgtcataattagtcattaagcccacgaattaa 37034371  T
Q  113 tactaaataatgcttggtttaat 135  Q
     ||||| ||||||||||||||||    
T  37034372 gactaattaatgcttggtttaat 37034394  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 32364909 - 32364860
Alignment:
Q  10 aaccggttaaaaccgatgactcggtcggttttttgagtcaatccggttta 59  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  32364909 aaccggttaaaaccggtgactcggccggttttttgagttaatccggttta 32364860  T

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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 389070 - 389217
Alignment:
Q  13 cggttaaaaccgatgactcggtcggttttttgagtcaatccggtttagtannnnnnnnnnncaatttctgtcataattagtcattagacacacgaattaa 112  Q
    |||| ||||||| |||||||| ||||||| ||||||||||||||||||||           ||||||| |||||||||||||||||  ||||||||||||    
T  389070 cggtaaaaaccggtgactcggccggttttctgagtcaatccggtttagtatttttttttt-caatttccgtcataattagtcattaagcacacgaattaa 389168  T
Q  113 tactaaataatgcttggtttaatacatttaataccgataaatgcttcaa 161  Q
     ||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  389169 gactaattaatgctttgttcaatacatttaataccgataaatgcttcaa 389217  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 10198967 - 10198883
Alignment:
Q  77 tttctgtcataattagtcattagacacacgaattaatactaaataatgcttggtttaatacatttaataccgataaatgcttcaa 161  Q
    |||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  10198967 tttctgtcataattagtcattaaacacacgaattaagactaattaatgtttggtttaatacatttaatatcgataaatgcttcaa 10198883  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 16216464 - 16216542
Alignment:
Q  83 tcataattagtcattagacacacgaattaatactaaataatgcttggtttaatacatttaataccgataaatgcttcaa 161  Q
    ||||||||||||||||  ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  16216464 tcataattagtcattaagcacacaaattaataataattaatgcttggtttaatacatttaataccgataaatgcttcaa 16216542  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 10199010 - 10198965
Alignment:
Q  13 cggttaaaaccgatgactcggtcggttttttgagtcaatccggttt 58  Q
    |||| ||||||| |||||||| ||||||| ||||||||||||||||    
T  10199010 cggtaaaaaccggtgactcggccggttttctgagtcaatccggttt 10198965  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 16216409 - 16216445
Alignment:
Q  26 tgactcggtcggttttttgagtcaatccggtttagta 62  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  16216409 tgactcggccggttttctgagtcaatccggtttagta 16216445  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 12704078 - 12704158
Alignment:
Q  81 tgtcataattagtcattagacacacgaattaatactaaataatgcttggtttaatacatttaataccgataaatgcttcaa 161  Q
    |||||||||||||| |||  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  12704078 tgtcataattagtcgttaagcacacgaattaatactaattaatgctcggtttaatacatttaataccgataaatgcttcaa 12704158  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 25232007 - 25232131
Alignment:
Q  13 cggttaaaaccgatgactcggtcggttttttgagtcaatccggtttagtannnnnnnnnnncaatttctgtcataattagtcattagacacacgaattaa 112  Q
    |||| ||||||| |||||||| ||||||| ||||||||||||||||||||           |||||||||||||||||||||||||  ||||||||||||    
T  25232007 cggtaaaaaccggtgactcggccggttttctgagtcaatccggtttagtaattttttttt-caatttctgtcataattagtcattaagcacacgaattaa 25232105  T
Q  113 tactaaataatgcttggtttaataca 138  Q
     ||||| |||||  ||||||||||||    
T  25232106 gactaattaatgtatggtttaataca 25232131  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 55676075 - 55676012
Alignment:
Q  75 aatttctgtcataattagtcattagacacacgaattaatactaaataatgcttggtttaataca 138  Q
    ||||||||||||||||||||||||  |||||||||||| ||||| ||||| |||||||||||||    
T  55676075 aatttctgtcataattagtcattaagcacacgaattaagactaattaatgtttggtttaataca 55676012  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 12704008 - 12704060
Alignment:
Q  10 aaccggttaaaaccgatgactcggtcggttttttgagtcaatccggtttagta 62  Q
    |||||||  ||||||||||||||| || ||||  |||||||||||||||||||    
T  12704008 aaccggtggaaaccgatgactcggccgattttccgagtcaatccggtttagta 12704060  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 39375858 - 39375711
Alignment:
Q  13 cggttaaaaccgatgactcggtcggttttttgagtcaatccggtttagtannnnnnnnnnncaatttctgtcataattagtcattagacacacgaattaa 112  Q
    |||| |||| || |||||||| ||||||| ||||||||||||||||||||           |||||||  ||||||||||||||||  ||||||||||||    
T  39375858 cggtaaaaatcggtgactcggccggttttctgagtcaatccggtttagtatttttttttt-caatttccatcataattagtcattaagcacacgaattaa 39375760  T
Q  113 tactaaataatgcttggtttaatacatttaataccgataaatgcttcaa 161  Q
     ||||| |||||||| ||| ||||||||||||||  |||||||||||||    
T  39375759 gactaattaatgctttgttcaatacatttaatactaataaatgcttcaa 39375711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 39025274 - 39025232
Alignment:
Q  19 aaaccgatgactcggtcggttttttgagtcaatccggtttagt 61  Q
    |||||| |||||||| |||||||||||||||||||| ||||||    
T  39025274 aaaccggtgactcggccggttttttgagtcaatccgatttagt 39025232  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 18175519 - 18175551
Alignment:
Q  18 aaaaccgatgactcggtcggttttttgagtcaa 50  Q
    |||||||||||||||| ||||||||||||||||    
T  18175519 aaaaccgatgactcggccggttttttgagtcaa 18175551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 18224282 - 18224250
Alignment:
Q  18 aaaaccgatgactcggtcggttttttgagtcaa 50  Q
    |||||||||||||||| ||||||||||||||||    
T  18224282 aaaaccgatgactcggccggttttttgagtcaa 18224250  T

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