View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15741_low_23 (Length: 218)

Name: NF15741_low_23
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15741_low_23
NF15741_low_23
[»] chr5 (12 HSPs)
chr5 (16-167)||(2873409-2873560)
chr5 (16-167)||(2903915-2904066)
chr5 (87-167)||(2844034-2844114)
chr5 (87-167)||(2855867-2855947)
chr5 (74-165)||(9004455-9004546)
chr5 (87-167)||(8547081-8547161)
chr5 (74-167)||(8536583-8536676)
chr5 (98-167)||(8637967-8638036)
chr5 (95-167)||(8678820-8678892)
chr5 (101-167)||(1599258-1599324)
chr5 (89-167)||(8530013-8530091)
chr5 (95-167)||(8645312-8645384)
[»] chr7 (2 HSPs)
chr7 (87-165)||(48360797-48360875)
chr7 (89-167)||(35780923-35781001)
[»] chr4 (1 HSPs)
chr4 (89-167)||(9444174-9444252)
[»] scaffold0627 (1 HSPs)
scaffold0627 (101-167)||(5697-5763)
[»] chr1 (1 HSPs)
chr1 (91-157)||(5131596-5131662)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 2873409 - 2873560
Alignment:
Q  16 aagaataaagggttcaattaccccaccaagggctactatccaaagatgcagcaataaagcagaaagtcaacaactttgcccttactttgataatcttcca 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||    
T  2873409 aagaaaaaagggttcaattaccccaccaagggctactatccaaagatgcagcaataaatcaaaatgtcaacaactttgcccttactttgataatcttcca 2873508  T
Q  116 tctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2873509 tctcacttaactacccacattcttcttcaacttcccattaagtctcttctca 2873560  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 2903915 - 2904066
Alignment:
Q  16 aagaataaagggttcaattaccccaccaagggctactatccaaagatgcagcaataaagcagaaagtcaacaactttgcccttactttgataatcttcca 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  2903915 aagaaaaaagggttcaattaccccaccaagggctactatccaaagatgcagcaataaatcagaaagtcaacaactttgtccttactttgataatcttcca 2904014  T
Q  116 tctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    | ||| ||||||||| | ||||| ||  | ||||||||||||||||||||||    
T  2904015 tttcacttaactaccgaaattctcctaaagcttcccattaagtctcttctca 2904066  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 2844034 - 2844114
Alignment:
Q  87 aactttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||  | ||||||||||||||||||||||    
T  2844034 aactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctca 2844114  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 2855867 - 2855947
Alignment:
Q  87 aactttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||  | ||||||||||||||||||||||    
T  2855867 aactttgcccttactttgataattttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctca 2855947  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 9004546 - 9004455
Alignment:
Q  74 gcagaaagtcaacaactttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttct 165  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||  | |||| ||||||||| ||||| ||||||||||||||||||||    
T  9004546 gcagaaagtcatgaactttgcccttactttgctaatcttccatctcacctcactaaccacattctgcttcatcttcccattaagtctcttct 9004455  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 8547081 - 8547161
Alignment:
Q  87 aactttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    ||||||||||||| ||||||||||||||||||||  | ||| |||||||||| ||| |||||| ||| |||||||||||||    
T  8547081 aactttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctca 8547161  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 8536676 - 8536583
Alignment:
Q  74 gcagaaagtcaacaactttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    |||||||| || |||||||||||||| |||||||||||||| |||||  | | | | |||||||| |||||||||||  ||||||| |||||||    
T  8536676 gcagaaagccatcaactttgcccttattttgataatcttccgtctcacgttattgctcacattctgcttcaacttccatttaagtcgcttctca 8536583  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 8638036 - 8637967
Alignment:
Q  98 tactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    |||||||||||||||||||| ||  | || ||||| ||||| ||||||||| ||||||||||||||||||    
T  8638036 tactttgataatcttccatcccacatcaccacccaaattctgcttcaactttccattaagtctcttctca 8637967  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 8678892 - 8678820
Alignment:
Q  95 ccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    ||||||||||||||||||||||| ||  | | | |||||||| | ||||| ||||||||||| ||||||||||    
T  8678892 ccttactttgataatcttccatcacacatcattgcccacattttgcttcatcttcccattaaatctcttctca 8678820  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 1599258 - 1599324
Alignment:
Q  101 tttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    |||||||||||| |||||||  | ||| ||| |||||| ||||||||||| |||||||| |||||||    
T  1599258 tttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttctca 1599324  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 8530091 - 8530013
Alignment:
Q  89 ctttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    ||||||||||| |||||||| ||||| |||||  | ||| |||||||||| |||| ||||||  |||||||| ||||||    
T  8530091 ctttgcccttattttgataaacttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttctca 8530013  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 8645384 - 8645312
Alignment:
Q  95 ccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    ||||||||||||||||||||||| ||  | | | |||||||  | ||||| ||||||||||| ||||||||||    
T  8645384 ccttactttgataatcttccatcacacatcattgcccacatgttgcttcatcttcccattaaatctcttctca 8645312  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 48360797 - 48360875
Alignment:
Q  87 aactttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttct 165  Q
    ||||||||||||| |||||||||||||||| |||  | ||| |||||||||| ||||||||||||||||||||||||||    
T  48360797 aactttgcccttattttgataatcttccatatcacctcactgcccacattctccttcaacttcccattaagtctcttct 48360875  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 35781001 - 35780923
Alignment:
Q  89 ctttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    |||| |||||| ||||||||||||||||| ||  | ||  |||||||| | |||||||||||||| || ||||||||||    
T  35781001 ctttacccttattttgataatcttccatcccacctcaccgcccacattttgcttcaacttcccataaaatctcttctca 35780923  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 9444252 - 9444174
Alignment:
Q  89 ctttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    ||||||||||| |||||||||||||| |||||  | ||| |||||||||| |||| ||||||  |||||||| ||||||    
T  9444252 ctttgcccttattttgataatcttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttctca 9444174  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 5763 - 5697
Alignment:
Q  101 tttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaagtctcttctca 167  Q
    ||||||| ||||||||| ||  | || || |||||| |||||||||||||||| |||||||||||||    
T  5763 tttgatattcttccatcccacctcaccactcacatttttcttcaacttcccatcaagtctcttctca 5697  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 5131662 - 5131596
Alignment:
Q  91 ttgcccttactttgataatcttccatctcatttaactacccacattcttcttcaacttcccattaag 157  Q
    ||||||||| ||||||||||||||||| ||  | ||| |||||||| | ||| ||||||||||||||    
T  5131662 ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaag 5131596  T

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