View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15741_low_5 (Length: 548)

Name: NF15741_low_5
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15741_low_5
NF15741_low_5
[»] chr3 (4 HSPs)
chr3 (1-548)||(11024338-11024885)
chr3 (1-548)||(11015326-11015873)
chr3 (1-548)||(11005763-11006310)
chr3 (42-241)||(47452021-47452220)
[»] chr4 (35 HSPs)
chr4 (84-171)||(45366402-45366489)
chr4 (74-171)||(45372253-45372350)
chr4 (247-334)||(48891385-48891469)
chr4 (275-330)||(7877727-7877782)
chr4 (270-333)||(48170587-48170650)
chr4 (274-321)||(48902929-48902976)
chr4 (270-333)||(50669048-50669111)
chr4 (277-330)||(7908325-7908378)
chr4 (37-171)||(7771170-7771298)
chr4 (274-317)||(48735423-48735466)
chr4 (247-334)||(48852636-48852723)
chr4 (362-417)||(48852739-48852794)
chr4 (362-417)||(49048526-49048581)
chr4 (275-317)||(7237764-7237806)
chr4 (275-317)||(7771396-7771438)
chr4 (275-317)||(7790081-7790123)
chr4 (45-203)||(48902703-48902861)
chr4 (274-331)||(48147744-48147801)
chr4 (49-230)||(48870311-48870492)
chr4 (49-230)||(48885997-48886178)
chr4 (89-206)||(50668861-50668978)
chr4 (6-78)||(7908063-7908135)
chr4 (270-314)||(37827029-37827073)
chr4 (270-330)||(50250809-50250869)
chr4 (270-309)||(7813470-7813509)
chr4 (270-309)||(7822959-7822998)
chr4 (362-417)||(7877801-7877856)
chr4 (362-417)||(7908392-7908447)
chr4 (267-314)||(48156465-48156512)
chr4 (270-317)||(49048614-49048661)
chr4 (365-414)||(45384842-45384891)
chr4 (377-418)||(48705329-48705370)
chr4 (377-418)||(48735352-48735393)
chr4 (480-548)||(48147554-48147622)
chr4 (274-334)||(49041188-49041248)
[»] chr7 (2 HSPs)
chr7 (270-332)||(48883794-48883856)
chr7 (45-112)||(30124190-30124257)
[»] chr6 (4 HSPs)
chr6 (6-112)||(21015508-21015614)
chr6 (270-317)||(21979679-21979726)
chr6 (264-317)||(21015796-21015849)
chr6 (240-317)||(14197705-14197785)
[»] chr8 (4 HSPs)
chr8 (270-317)||(12200300-12200347)
chr8 (270-317)||(12444728-12444775)
chr8 (5-109)||(4032156-4032260)
chr8 (358-413)||(4031858-4031913)
[»] chr5 (1 HSPs)
chr5 (274-332)||(29696203-29696261)
[»] chr1 (5 HSPs)
chr1 (274-333)||(24310168-24310227)
chr1 (274-317)||(24367144-24367187)
chr1 (274-333)||(24369477-24369536)
chr1 (274-323)||(24340405-24340454)
chr1 (274-323)||(24352770-24352819)


Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 11024885 - 11024338
Alignment:
Q  1 actaatagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11024885 actaatagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaacc 11024786  T
Q  101 ttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttgacttgttcttccaacatttatctatggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11024785 ttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttgacttgttcttccaacatttatctatggaa 11024686  T
Q  201 tccatcgaccggacatcacaagaaaataccatttcctccttccaatttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaaga 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11024685 tccatcgaccagacatcacaagaaaataccatttcctccttccaatttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaaga 11024586  T
Q  301 gatgattacttggtggtatcagtgtcctatgataagagtatagacctaattgaagaaaatatttcatcacatttgaagtttttctctttgagagctaata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11024585 gatgattacttggtggtatcagtgtcctatgataagagtatagacctaattgaagaaaatatttcatcacatttgaagtttttctctttgagagctaata 11024486  T
Q  401 catggaacgaaattgagtgtcttggattggtgaagtataagcacttcccttattatatgaatgtaaatgatgatcccacagtagggacactctttaatgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11024485 catggaacgaaattgagtgtcttggattggtgaagtataagcacttcccttattatatgaatgtaaatgatgatcccacagtagggacactctttaatgg 11024386  T
Q  501 gaatattcattggttctcttttcgcaatgatttatcaatggatgttat 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11024385 gaatattcattggttctcttttcgcaatgatttatcaatggatgttat 11024338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 11015873 - 11015326
Alignment:
Q  1 actaatagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaacc 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  11015873 actaatagaattgtgttcatgtcaactctagctcttgaaactcgatccattgattttgaagcgtcgcttaacgatgattctgcttctacttcactgaacc 11015774  T
Q  101 ttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttgacttgttcttccaacatttatctatggaa 200  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  11015773 ttaattttatgcctccagaatcttattctagtcttgaaattaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaa 11015674  T
Q  201 tccatcgaccggacatcacaagaaaataccatttcctccttccaatttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaaga 300  Q
    |||||| || |||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  11015673 tccatcaactggacatcacaaacaaataccttttcctgcttccaatttagatgccaaatattcatgttgtctgtatggttttgggtatgaccatttaaga 11015574  T
Q  301 gatgattacttggtggtatcagtgtcctatgataagagtatagacctaattgaagaaaatatttcatcacatttgaagtttttctctttgagagctaata 400  Q
    |||||||||||||||||||||||||||||| |||  |||||||||| | | || || |||||||| |||||||||||||||||||| |||||||||||||    
T  11015573 gatgattacttggtggtatcagtgtcctataatacaagtatagacccagtagacgataatatttcttcacatttgaagtttttctcattgagagctaata 11015474  T
Q  401 catggaacgaaattgagtgtcttggattggtgaagtataagcacttcccttattatatgaatgtaaatgatgatcccacagtagggacactctttaatgg 500  Q
    ||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||||    
T  11015473 catggaacgaaattgagtgtcctggatttgtaaagtataatcacttcccttattatatgaatgcaaatgatgatcccaaagtagggatgctctttaatgg 11015374  T
Q  501 gaatattcattggttctcttttcgcaatgatttatcaatggatgttat 548  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||    
T  11015373 gactattcattggttctcttttcgccatgatttatcaatggatgttat 11015326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 11006310 - 11005763
Alignment:
Q  1 actaatagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaacc 100  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  11006310 actaatagaattgtgttcatgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcactgaact 11006211  T
Q  101 ttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttgacttgttcttccaacatttatctatggaa 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||   |||| || ||||||||    
T  11006210 ttaattttatacttcccgaatcttattctaatcttgaaattaaaagttcatgtcgaggatttattgttttgacttattctttacacatctacctatggaa 11006111  T
Q  201 tccatcgaccggacatcacaagaaaataccatttcctccttccaatttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaaga 300  Q
    |||||| || |||| || ||   ||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  11006110 tccatccactggacgtctcagacaaataccttttcctccttccaatttagatgcaaaatatgtatgttgtctatatggttttgggtatgaccattcaaga 11006011  T
Q  301 gatgattacttggtggtatcagtgtcctatgataagagtatagacctaattgaagaaaatatttcatcacatttgaagtttttctctttgagagctaata 400  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||    
T  11006010 gatgattacttggtggtatcagtgtcctatgataaaagtgtagacccaattgaagataatatttcatcacgtttgaagtttttctcattgagagcgaata 11005911  T
Q  401 catggaacgaaattgagtgtcttggattggtgaagtataagcacttcccttattatatgaatgtaaatgatgatcccacagtagggacactctttaatgg 500  Q
    ||||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||  |||||||| || ||||||||    
T  11005910 catggaaagaaattgagtgtcatggattggtgaagtatactcacttcccttattatatgaatgcaaatgatgatcccaaggtagggacgctttttaatgg 11005811  T
Q  501 gaatattcattggttctcttttcgcaatgatttatcaatggatgttat 548  Q
    || |||||||||||||||||||||| ||||||| ||||||||||||||    
T  11005810 gactattcattggttctcttttcgccatgatttgtcaatggatgttat 11005763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 42 - 241
Target Start/End: Complemental strand, 47452220 - 47452021
Alignment:
Q  42 tcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaatt 141  Q
    |||||| |||||||| ||||| || ||||| ||||||  ||||||||||||||  |||||||||||| |||||||| ||||| | | |||||||||||||    
T  47452220 tcgatcaatagatttagaagcgtcacttaatgatgatagtgcttctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaatt 47452121  T
Q  142 aaaagttcttgtagaggatttatagttttgacttgttcttccaacatttatctatggaatccatcgaccggacatcacaagaaaataccatttcctcctt 241  Q
    ||| |||| |||||||| |||||| |||| | ||||||||| ||||| ||  ||||||||||||| || |||  ||||||  ||||||| || |||||||    
T  47452120 aaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttgcctcctt 47452021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 45366489 - 45366402
Alignment:
Q  84 ttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttg 171  Q
    |||| ||||||| || ||| ||||| |||||||||||||||||||| ||||| |||||||| |||| |||||||| |||||| |||||    
T  45366489 ttctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttg 45366402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 45372350 - 45372253
Alignment:
Q  74 atgattctgcttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttg 171  Q
    |||||||||||||| ||||||| ||||||| |||| ||  |||| ||||| ||| | |||||||||||||| |||| |||||||| |||||| |||||    
T  45372350 atgattctgcttctgcttcactaaaccttagttttgtggatccccaatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttg 45372253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 48891385 - 48891469
Alignment:
Q  247 ttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 334  Q
    ||||||||||| |||| ||||| ||||||||||||| |||||||    | |||||||||||| |||||||| ||||||||||||||||    
T  48891385 ttagatgccaactatttatgttatctatatggttttaggtatgag---ttaagagatgattagttggtggtttcagtgtcctatgata 48891469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 7877727 - 7877782
Alignment:
Q  275 atggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 330  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcctat 7877782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 48170650 - 48170587
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 333  Q
    ||||||||||||||||||||| || | ||||||||||||||| ||||| |||||||||| ||||    
T  48170650 tctatatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgat 48170587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 48902929 - 48902976
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggtatca 321  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  48902929 tatggttttgggtatgaccactcaagagatgattacttgatggtatca 48902976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 50669048 - 50669111
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 333  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| || ||| |||||||||||    
T  50669048 tctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgat 50669111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 7908325 - 7908378
Alignment:
Q  277 ggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 330  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctat 7908378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 7771170 - 7771298
Alignment:
Q  37 gaaactcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttg 136  Q
    |||| |||||| ||||||||||||||||  |||||||||||| |||      ||||| | ||||||||||||  |||||| |||||||||| |  | |||    
T  7771170 gaaattcgatctatagattttgaagcatttcttaacgatgatcctg------cttcagtgaaccttaatttttcgcttccagaatcttattttcctgttg 7771263  T
Q  137 aaattaaaagttcttgtagaggatttatagttttg 171  Q
    |||||| | |||| |||||||| |||||| |||||    
T  7771264 aaattagaggttcgtgtagagggtttatacttttg 7771298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 317
Target Start/End: Complemental strand, 48735466 - 48735423
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    |||||||||||||||||||||| || ||||||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggt 48735423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 48852636 - 48852723
Alignment:
Q  247 ttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 334  Q
    ||||||| || |||||  |||| |||||||||||||||||||||||  ||||  |||||||||||||| || | | ||||||||||||    
T  48852636 ttagatggcacatatttctgttatctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatgata 48852723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 48852739 - 48852794
Alignment:
Q  362 tttcatcacatttgaagtttttctctttgagagctaatacatggaacgaaattgag 417  Q
    |||||||||||||  |||||||||| |||||||||||| ||||||| |||||||||    
T  48852739 tttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaattgag 48852794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 49048581 - 49048526
Alignment:
Q  362 tttcatcacatttgaagtttttctctttgagagctaatacatggaacgaaattgag 417  Q
    |||||||||||||| |||||||||| ||||||| ||||| |||||| |||||||||    
T  49048581 tttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgag 49048526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 7237806 - 7237764
Alignment:
Q  275 atggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggt 7237764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 7771396 - 7771438
Alignment:
Q  275 atggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggt 7771438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 7790081 - 7790123
Alignment:
Q  275 atggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggt 7790123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 48902703 - 48902861
Alignment:
Q  45 atccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaa 144  Q
    ||||||||||||||||||||| || ||||||| |  ||||| | ||||||  |||||||| ||||||||||  | |||||||| | ||||  |||||| |    
T  48902703 atccatagattttgaagcatccctcaacgatggtcgtgcttatgcttcacagaaccttaaatttatgcttcgtggatcttattttgatctaaaaattata 48902802  T
Q  145 agttcttgtagaggatttatagttttgacttgttcttccaacatttatctatggaatcc 203  Q
     |||| || ||||| ||| || |||||   ||||||| || ||| ||| ||||||||||    
T  48902803 ggttcatgcagagggtttgtacttttgcactgttctttcaccatctatttatggaatcc 48902861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 48147801 - 48147744
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 331  Q
    |||||||||||||||||||| | || |||||||||||||||||| ||| | |||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttcattctcctatg 48147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 48870311 - 48870492
Alignment:
Q  49 atagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagtt 148  Q
    |||||||| ||||||||||||    ||||||||   ||| ||||| | || ||| ||||| ||||||| |||||||||| | || ||||||||||| |||    
T  48870311 atagatttagaagcatcgcttgcttatgattctatctcttcttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaattaaaggtt 48870410  T
Q  149 cttgtagaggatttatagttttgacttgttcttccaacatttatctatggaatccatcgaccggacatcacaagaaaatacc 230  Q
    | |||||||| |||||| | |||  |||| || | | | | || |||||||||||||| ||||||  ||||||  |||||||    
T  48870411 catgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacc 48870492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 48885997 - 48886178
Alignment:
Q  49 atagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagtt 148  Q
    |||||||| ||||||||||||    ||||||||   ||| ||||| | || ||| ||||| ||||||| |||||||||| | || ||||||||||| |||    
T  48885997 atagatttagaagcatcgcttgcttatgattctatctcttcttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaattaaaggtt 48886096  T
Q  149 cttgtagaggatttatagttttgacttgttcttccaacatttatctatggaatccatcgaccggacatcacaagaaaatacc 230  Q
    | |||||||| |||||| | |||  |||| || | | | | || |||||||||||||| ||||||  ||||||  |||||||    
T  48886097 catgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacc 48886178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 50668861 - 50668978
Alignment:
Q  89 cttcacttaaccttaattttatgcttcccgaatcttattctaatcttgaaattaaaagttcttgtagaggatttatagttttgacttgttcttccaacat 188  Q
    ||||||| ||||||||||||   |||||  ||||||||| || || ||| |||| | |||| |||||||| |||||| |||||  |||||||||||||||    
T  50668861 cttcactcaaccttaatttttcacttcctcaatcttattttactcctgatattagaggttcgtgtagaggctttatatttttgcattgttcttccaacat 50668960  T
Q  189 ttatctatggaatccatc 206  Q
     |   |||||||||||||    
T  50668961 ctgcatatggaatccatc 50668978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 7908063 - 7908135
Alignment:
Q  6 tagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgat 78  Q
    ||||||| |||| || ||||||||| |||  ||||||||||| ||||||||| ||||||  ||||||||||||    
T  7908063 tagaattatgtttatatcaactctatctcatgaaactcgatctatagattttaaagcatttcttaacgatgat 7908135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 37827073 - 37827029
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggt 314  Q
    ||||||||||||||| |||||||| || |||||||||||||||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgattacttggt 37827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 50250869 - 50250809
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 330  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||| ||| | ||||||    
T  50250869 tctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 50250809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 7813470 - 7813509
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattac 309  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7813470 tctatatggttttggttatgaccagtcaagagatgattac 7813509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 7822959 - 7822998
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattac 309  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7822959 tctatatggttttggttatgaccagtcaagagatgattac 7822998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 7877801 - 7877856
Alignment:
Q  362 tttcatcacatttgaagtttttctctttgagagctaatacatggaacgaaattgag 417  Q
    ||||| ||||||||||||||||||| || |||| |||||||||||| |||| ||||    
T  7877801 tttcaacacatttgaagtttttctcatttagagataatacatggaaagaaactgag 7877856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 7908392 - 7908447
Alignment:
Q  362 tttcatcacatttgaagtttttctctttgagagctaatacatggaacgaaattgag 417  Q
    ||||| |||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  7908392 tttcaacacatttgaagtttttctcagttagagataatacatggaaagaaattgag 7908447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 48156512 - 48156465
Alignment:
Q  267 ttgtctatatggttttgggtatgaccattcaagagatgattacttggt 314  Q
    |||||||||||| ||||||||||| || | ||||||||||||||||||    
T  48156512 ttgtctatatggatttgggtatgatcaattaagagatgattacttggt 48156465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 49048661 - 49048614
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    |||||||||||||||||||||||  |||| ||||||||| ||||||||    
T  49048661 tctatatggttttgggtatgacccatcaacagatgattatttggtggt 49048614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 45384891 - 45384842
Alignment:
Q  365 catcacatttgaagtttttctctttgagagctaatacatggaacgaaatt 414  Q
    ||||||| ||| |||||||||| |||||||||||| ||||||| ||||||    
T  45384891 catcacacttggagtttttctcgttgagagctaatgcatggaaagaaatt 45384842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 48705370 - 48705329
Alignment:
Q  377 agtttttctctttgagagctaatacatggaacgaaattgagt 418  Q
    |||||||||| ||||||| |||||||||||| ||||||||||    
T  48705370 agtttttctcattgagagttaatacatggaaagaaattgagt 48705329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 48735393 - 48735352
Alignment:
Q  377 agtttttctctttgagagctaatacatggaacgaaattgagt 418  Q
    |||||||||| |||||||||||||| ||||| ||||||||||    
T  48735393 agtttttctcattgagagctaatacctggaaagaaattgagt 48735352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 548
Target Start/End: Complemental strand, 48147622 - 48147554
Alignment:
Q  480 agtagggacactctttaatgggaatattcattggttctcttttcgcaatgatttatcaatggatgttat 548  Q
    ||||||| |||| |||| ||||  ||||||||||||  |||||| |||||||||| ||| |||||||||    
T  48147622 agtagggtcactttttagtggggctattcattggttggcttttcacaatgatttagcaagggatgttat 48147554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 49041248 - 49041188
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 334  Q
    ||||||||||||||||| |  |||| ||||||||||||| |||| ||||| || |||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttgatggtttcagtatcgtatgata 49041188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 48883794 - 48883856
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatga 332  Q
    ||||||||||||||| |||||||  ||||||||||||||| ||||||| ||| ||||||||||    
T  48883794 tctatatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgtcctatga 48883856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 30124257 - 30124190
Alignment:
Q  45 atccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaattttatgc 112  Q
    ||||||||||||||| ||||| ||||| ||| ||||||||| | ||||||| | |||| |||||||||    
T  30124257 atccatagattttgatgcatctcttaaggatcattctgcttatgcttcactgagccttgattttatgc 30124190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 21015508 - 21015614
Alignment:
Q  6 tagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaat 105  Q
    ||||||| |||||||||||| || ||  || ||||||||||  || ||||||||| |||| |||| |||| ||| | |||||||||| || |||||||||    
T  21015508 tagaattttgttcatgtcaaatccagaccttgaaactcgattgatcgattttgaaacatcacttagcgattattatacttctacttcgctgaaccttaat 21015607  T
Q  106 tttatgc 112  Q
    |||||||    
T  21015608 tttatgc 21015614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 21979726 - 21979679
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  21979726 tctatatggttttggttatgaccagtcaagaaatgattacttggtggt 21979679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 21015796 - 21015849
Alignment:
Q  264 atgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    ||||| |||||||||||||||||||||||  |||| ||||||||| ||||||||    
T  21015796 atgttatctatatggttttgggtatgacccatcaacagatgattatttggtggt 21015849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 14197785 - 14197705
Alignment:
Q  240 ttccaatttagatgccaaatattcatgttgtct---atatggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    ||||||||||||||||||  ||||||||| |||   |||||| |||||||||||||  ||||   ||||||||||||||||    
T  14197785 ttccaatttagatgccaaggattcatgttttcttctatatggctttgggtatgacctgtcaaccaatgattacttggtggt 14197705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 12200300 - 12200347
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  12200300 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 12200347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 12444728 - 12444775
Alignment:
Q  270 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  12444728 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 12444775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 4032260 - 4032156
Alignment:
Q  5 atagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgattctgcttctacttcacttaaccttaa 104  Q
    ||||| ||||| |||| ||||||| |  |||  |||||||||| |||||||| ||| |||| |||||| |||||||||||| | || ||||  |||||||    
T  4032260 atagacttgtgatcatatcaactccaaatcttaaaactcgatctatagatttcgaaacatcccttaaccatgattctgcttgtgctccactagaccttaa 4032161  T
Q  105 tttta 109  Q
    |||||    
T  4032160 tttta 4032156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 4031913 - 4031858
Alignment:
Q  358 aatatttcatcacatttgaagtttttctctttgagagctaatacatggaacgaaat 413  Q
    |||||||||||||||||| ||||||||||  ||||||| || |||||||| |||||    
T  4031913 aatatttcatcacatttggagtttttctcactgagagccaacacatggaaagaaat 4031858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 29696203 - 29696261
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatga 332  Q
    |||||||||||||||||| | |||| |||||||||||||||| | ||| ||||||||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 24310168 - 24310227
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 333  Q
    ||||||||||| |||||| | |||||||||||||||||||| || | ||| |||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 24310227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 24367144 - 24367187
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggt 317  Q
    |||||||||||||||||| | |||| ||||||||||||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggt 24367187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 24369477 - 24369536
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 333  Q
    ||||||||||| |||||| | |||| |||||||||| ||||||| ||||| |||||||||    
T  24369477 tatggttttggctatgacgagtcaacagatgattacctggtggtttcagtatcctatgat 24369536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 24340405 - 24340454
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 323  Q
    |||||||||||||||||| | |||| | |||||||||||||||| |||||    
T  24340405 tatggttttgggtatgacgaatcaacatatgattacttggtggtttcagt 24340454  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 24352770 - 24352819
Alignment:
Q  274 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 323  Q
    |||||||||||||||||| | |||| | |||||||||||||||| |||||    
T  24352770 tatggttttgggtatgacgaatcaacatatgattacttggtggtttcagt 24352819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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