View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15741_low_8 (Length: 412)
Name: NF15741_low_8
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_low_8 |
 | |
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| [»] chr2 (4 HSPs) |
| |
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| [»] scaffold1964 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Complemental strand, 2974342 - 2973941
Alignment:
| Q |
11 |
catcatcaacctcggccattgaggcaatttttgcattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2974342 |
catcgtcaacctcggccattgaggcaatttttgcgttgttacattctttatctgccacactttctcaacggctggctgcaatattttggagtctttggaa |
2974243 |
T |
|
| Q |
111 |
tcataggaacttaaaggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggcatcttccaatgacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2974242 |
gcataggaacttaaaggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggcatcttgcaatgacc |
2974143 |
T |
|
| Q |
211 |
ttactgctgcaagcttgtctgttgctcctgcaggtacgcaaccaacagctgttagtactgatatctctgccgtaacagctgctgttcctgctgtcttcca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2974142 |
ttactgctgcaagcttgtctgttgctcctgcaggtacgcaaccaacagctgttagtactgatatctctgccgtaacagctgctgttcctgctgtcttcca |
2974043 |
T |
|
| Q |
311 |
accagccgctgttagcgctgctgctagtgctgttccagctgctgctagtactgatatctctgtcgtaacagctgctgttcctgttgtcttccaaccagca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2974042 |
accagccgctgttagcgctgctgctagtgctgttccagttgctgctagtactgatatctctgtcgtaacagctgctgttcctgttgtcttccaaccagca |
2973943 |
T |
|
| Q |
411 |
gc |
412 |
Q |
| |
|
|| |
|
|
| T |
2973942 |
gc |
2973941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 258 - 354
Target Start/End: Complemental strand, 2974002 - 2973906
Alignment:
| Q |
258 |
gctgttagtactgatatctctgccgtaacagctgctgttcctgctgtcttccaaccagccgctgttagcgctgctgctagtgctgttccagctgctg |
354 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
2974002 |
gctgctagtactgatatctctgtcgtaacagctgctgttcctgttgtcttccaaccagcagctgttccagctgctgctagtgctgttccagctgctg |
2973906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 14994434 - 14994562
Alignment:
| Q |
44 |
cattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaacttaaaggtgtgggaagacgtcac |
143 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| || || || || ||||||||||| ||||||| |||||||| | || ||||| |||||| |||| |
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|
| T |
14994434 |
cattgttgcattctttatccgccacactttctcaaaggatgactgcactattttggagtatttggaagcataggaatgtcaaagtgtgcgaagacatcac |
14994533 |
T |
|
| Q |
144 |
agaaacttgtgcaatagtggtggaaagag |
172 |
Q |
| |
|
|||||||| ||| | ||||| ||||||| |
|
|
| T |
14994534 |
agaaacttatgcgacggtggttgaaagag |
14994562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 355
Target Start/End: Original strand, 17826252 - 17826393
Alignment:
| Q |
216 |
gctgcaagcttgtctgttgctcctgcaggtacgcaaccaacagctgtta--gtactgatatctctgccgtaacagctgctgttcctgctgtcttccaacc |
313 |
Q |
| |
|
||||||| |||| ||| |||||||| |||||||| | | ||||||||| |||||| || ||| | ||||||| ||||| ||||||||| |||||||| |
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|
| T |
17826252 |
gctgcaaacttgactgcagctcctgctggtacgcatctagcagctgttaacgtactgttacttctactgtaacagatgctgctcctgctgttttccaacc |
17826351 |
T |
|
| Q |
314 |
agccgctgttagcgctgctgctagtgctgttccagctgctgc |
355 |
Q |
| |
|
| | |||| ||||||| ||| || | ||||||||||||||| |
|
|
| T |
17826352 |
aactgctgctagcgctcttgcaagcgatgttccagctgctgc |
17826393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1964 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold1964
Description:
Target: scaffold1964; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 383 - 743
Alignment:
| Q |
11 |
catcatcaacctcggccattgaggcaatttttgcattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaa |
110 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
383 |
catcgtcaccctcggccattgaggcaatttttgcattgttatattctttatctgccacactttctcaacggttggttgcaatattttggagtctttggaa |
482 |
T |
|
| Q |
111 |
tcataggaacttaaaggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggcatctt-ccaatgac |
209 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| | |||| | |
|
|
| T |
483 |
gcataggaacttaaaggtgtggcaagacgtcacggaaacttgagcaatagtggtggaaagagcgtggtccttgattgacgattggcatcttgcaaatggc |
582 |
T |
|
| Q |
210 |
cttac---------------tgctgcaagcttgtctgttgctcctgcaggtacgcaaccaacagctgttagtactgatatctctgccgtaacagctgctg |
294 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| || || | |
|
|
| T |
583 |
cttactgttgcaagcttgtatgttgcaagcttgtatgttgctcctgtaggtacgcaaccaaca-ctgttagcactgatatctctgccgtaatagttgtta |
681 |
T |
|
| Q |
295 |
ttcctgctgtcttccaaccagccgctgttagcgctgctgctagtgctgttccagctgctgct |
356 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
682 |
ttcctgctgtaatccaaccagcagttgttagcgctgctgctagtgatgttccagctgctgct |
743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 12371577 - 12371430
Alignment:
| Q |
50 |
tacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaacttaaaggtgtgggaagacgtcacagaaac |
149 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||| || || ||||| |
|
|
| T |
12371577 |
tacagtctctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaagatgttacggaaac |
12371478 |
T |
|
| Q |
150 |
ttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggca |
197 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| ||| |||| || ||||| |
|
|
| T |
12371477 |
ttgtgcaacagtggttgaaagagctcggtctttggttgaagattggca |
12371430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 12371321 - 12371275
Alignment:
| Q |
309 |
caaccagccgctgttagcgctgctgctagtgctgttccagctgctgc |
355 |
Q |
| |
|
|||||||| ||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
12371321 |
caaccagcagctgttagcgctgctgcaattgatgttccagctgctgc |
12371275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 29755800 - 29755621
Alignment:
| Q |
22 |
tcggccattgaggcaatttttgcattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaact |
121 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||| |||||||||| || || || ||||||||||| |||| |||||||| |||||||| ||||||||| |
|
|
| T |
29755800 |
tcggccattgaggccatttttgctttgctacaatctttatctgttacgctctcccaacggctggcagcaattttttggagcctttggaagcataggaaca |
29755701 |
T |
|
| Q |
122 |
taaaggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggcatctt |
201 |
Q |
| |
|
||||||||||||||||| | || || |||||||||| ||| || || |||||||||||||||| ||| || ||||||||| |
|
|
| T |
29755700 |
taaaggtgtgggaagacattacggagacttgtgcaacagttgtcgatagagcgcggtccttgactgatgaatggcatctt |
29755621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 26682417 - 26682549
Alignment:
| Q |
40 |
tttgcattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaacttaaaggtgtgggaagacg |
139 |
Q |
| |
|
||||| ||| |||| ||| |||| ||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||| ||||||||| |||||| | |
|
|
| T |
26682417 |
tttgctttgctacactctctatccaccacactttttcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtaggaagatg |
26682516 |
T |
|
| Q |
140 |
tcacagaaacttgtgcaatagtggtggaaagag |
172 |
Q |
| |
|
| | |||||||| |||| |||||| ||||||| |
|
|
| T |
26682517 |
ttatggaaacttgcgcaacagtggttgaaagag |
26682549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 173
Target Start/End: Complemental strand, 13949544 - 13949399
Alignment:
| Q |
28 |
attgaggcaatttttgcattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaacttaaagg |
127 |
Q |
| |
|
||||| || |||||| | ||||| |||||||||||| ||| | |||| || || ||||| || | ||||||||| ||||||| |||||||| | || | |
|
|
| T |
13949544 |
attgaagctattttttccttgttgcattctttatctttcacgcattcttaaaggatggctgcacttttttggagtatttggaagcataggaatgtcaaag |
13949445 |
T |
|
| Q |
128 |
tgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagc |
173 |
Q |
| |
|
|||||||| || | |||||||||| ||| | |||||| |||||||| |
|
|
| T |
13949444 |
tgtgggaaaacataacagaaacttatgcgacagtggttgaaagagc |
13949399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 30141804 - 30141629
Alignment:
| Q |
22 |
tcggccattgaggcaatttttgcattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaact |
121 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||| || || || ||||||||||| |||| |||||||| |||||||| ||||||||| |
|
|
| T |
30141804 |
tcggccattgaggccatttttgctttgttacaatctttatctgttacgctctcccaacggctggcagcaattttttggagcctttggaagcataggaaca |
30141705 |
T |
|
| Q |
122 |
taaaggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggca |
197 |
Q |
| |
|
||||| ||||||||||| | || || |||||||||| ||| ||||| |||||| ||||||||| ||||| ||||| |
|
|
| T |
30141704 |
taaagttgtgggaagacattacggagacttgtgcaacagttgtggatagagcgtggtccttgacggacgaatggca |
30141629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 17392726 - 17392597
Alignment:
| Q |
44 |
cattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaacttaaaggtgtgggaagacgtcac |
143 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| || |||| || |||||||||| ||||||| |||||||| | || |||||||| |||| || |
|
|
| T |
17392726 |
cattgttgcattctttatctgccacgctttctcaaaggatggcagcactattttggagcatttggaagcataggaatgttaaagtgtgggatgacgaaac |
17392627 |
T |
|
| Q |
144 |
agaaacttgtgcaatagtggtggaaagagc |
173 |
Q |
| |
|
| ||||||||| || ||||| |||||||| |
|
|
| T |
17392626 |
ataaacttgtgtgatggtggttgaaagagc |
17392597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 12354541 - 12354716
Alignment:
| Q |
22 |
tcggccattgaggcaatttttgcattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaact |
121 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||| || || || || ||||||||||| |||| |||||||| ||||| || ||||||||| |
|
|
| T |
12354541 |
tcggccattgaggccatttttgctttgttacaatctttatatgttacgctctcccaacggctggcggcaattttttggagcctttgaaagcataggaaca |
12354640 |
T |
|
| Q |
122 |
taaaggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggca |
197 |
Q |
| |
|
| ||||||||||||||| | || || |||||||||| ||| || || |||||||||||||||| |||||| ||||| |
|
|
| T |
12354641 |
tcaaggtgtgggaagacattacggagacttgtgcaacagttgtcgatagagcgcggtccttgactgacgaatggca |
12354716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 20529152 - 20528977
Alignment:
| Q |
22 |
tcggccattgaggcaatttttgcattgttacattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaact |
121 |
Q |
| |
|
||||| |||||||| || ||||| ||| |||| ||| ||||||||||||| ||||||||| ||||| ||| ||||| ||||||| || |||||||| |
|
|
| T |
20529152 |
tcggctattgaggctatctttgctttgctacagtctctatctgccacactctctcaacggttggctgcaagtttttgatgtctttgaaagcataggaata |
20529053 |
T |
|
| Q |
122 |
taaaggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggca |
197 |
Q |
| |
|
|||||||||||||||| || | |||||||||||||| |||||| |||||||| ||||| ||| |||| || ||||| |
|
|
| T |
20529052 |
taaaggtgtgggaagatgttaaagaaacttgtgcaacagtggttgaaagagctcggtctttggttgaagattggca |
20528977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 42079874 - 42079995
Alignment:
| Q |
52 |
cattctttatctgccacactttctcaacggctggcttcaatattttggagtctttggaatcataggaacttaaaggtgtgggaagacgtcacagaaactt |
151 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||||| |||| ||||||||| ||||||| |||||||| | || |||||||||||| ||| |||||| |
|
|
| T |
42079874 |
cattctttatctaccacactttcttaaaggatggctacaattttttggagtatttggaagcataggaatgtcaaagtgtgggaagacaaaacataaactt |
42079973 |
T |
|
| Q |
152 |
gtgcaatagtggtggaaagagc |
173 |
Q |
| |
|
|||||| ||||| |||||||| |
|
|
| T |
42079974 |
gtgcaacggtggttgaaagagc |
42079995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 332 - 412
Target Start/End: Original strand, 6949497 - 6949577
Alignment:
| Q |
332 |
tgctagtgctgttccagctgctgctagtactgatatctctgtcgtaacagctgctgttcctgttgtcttccaaccagcagc |
412 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
6949497 |
tgctagtgttgttccagctgctgctagtactgatatctctgccgtaatagctgttgttcctgctgtcttccaaccagcagc |
6949577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 6949516 - 6949581
Alignment:
| Q |
258 |
gctgttagtactgatatctctgccgtaacagctgctgttcctgctgtcttccaaccagccgctgtt |
323 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
6949516 |
gctgctagtactgatatctctgccgtaatagctgttgttcctgctgtcttccaaccagcagctgtt |
6949581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 47747125 - 47747213
Alignment:
| Q |
266 |
tactgatatctctgccgtaacagctgctgttcctgctgtcttccaaccagccgctgttagcgctgctgctagtgctgttccagctgctg |
354 |
Q |
| |
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|
| T |
47747125 |
tactgacatccctgccgtaatagctgctgttcctgctgtattccaaccagcagctgttccagctgttgctagtgttgttccaactgctg |
47747213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 47747125 - 47747178
Alignment:
| Q |
359 |
tactgatatctctgtcgtaacagctgctgttcctgttgtcttccaaccagcagc |
412 |
Q |
| |
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|
|
| T |
47747125 |
tactgacatccctgccgtaatagctgctgttcctgctgtattccaaccagcagc |
47747178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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