View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15741_low_9 (Length: 389)
Name: NF15741_low_9
Description: NF15741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15741_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 45312662 - 45312302
Alignment:
| Q |
17 |
gaagaggaatagtgaaacgttattaatctcaaccgttggtattttacttaccacgtgtcctacatctgaacaaagaattgaaaactagaggaagtaagca |
116 |
Q |
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| T |
45312662 |
gaagaggaacagtgaaacgttattaatctcaaccgttggtattttacttaccacgtgtcctacatctgaacaaagaactgaaaactggaggaagtaagca |
45312563 |
T |
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| Q |
117 |
actggagcagatatgtactattgcagcatcataaatatattgtccctgtaagcttatacatatagacgcgaaatcagatagca-----aaaagaaaaagt |
211 |
Q |
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| T |
45312562 |
actggagcaaatctgtattcttgcagcatcgtaaatatattgtccctgtaagcttatacatacagacgccaaactagatagcaaaaaaaaaaaaaaaagt |
45312463 |
T |
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| Q |
212 |
tttgtgaacgtttgtgatggtaagttggtaacggaaaatgagtcgtccgccaacacaaacaacgatccaaacgctctttcgagccaaccagacccaatac |
311 |
Q |
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| T |
45312462 |
tttgtgaacatttgtgatggtgagttggtaacggaaaatgagtcgtccgccaaaacaaacaacgatccaaacgctctttcgagccaaccagacccaatat |
45312363 |
T |
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| Q |
312 |
gcaacaaaactggtatgacaaaactcgatccaaacaaaactgaaacaacatggcgatgcct |
372 |
Q |
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| T |
45312362 |
gcaacaaaacaaatatgagaaaacttgatccaaacaaaactgaaacagcatggcgatgcct |
45312302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 45313184 - 45313302
Alignment:
| Q |
10 |
gtgaaatgaagaggaatagtgaaacgttattaatctcaaccgttggtattttacttaccacgtgtcctacatctgaacaaagaatt-gaaaactagagga |
108 |
Q |
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| T |
45313184 |
gtgaaagggagaggaacggtgaaactttgttaatctcaaccgttggtattttacttgccacatatcctacatttgaacaaagaattggaaaattggacga |
45313283 |
T |
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| Q |
109 |
agtaagcaactggagcaga |
127 |
Q |
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| T |
45313284 |
agtaaggaactggagcaga |
45313302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 40847657 - 40847768
Alignment:
| Q |
17 |
gaagaggaatagtgaaacgttattaatctcaaccgttggtattttacttaccacgtgtcctacatctgaacaaagaattgaaaactagaggaagtaagca |
116 |
Q |
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||||||||| |||||||| || ||||||||||| |||||||||||||| |||| |||||||||||| |||||||||||| ||| | ||||||||||||| |
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| T |
40847657 |
gaagaggaacagtgaaacattgttaatctcaacggttggtattttactctccacatgtcctacatctaaacaaagaattggaaattggaggaagtaagca |
40847756 |
T |
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| Q |
117 |
actggagcagat |
128 |
Q |
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| T |
40847757 |
actggagcagat |
40847768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 40847173 - 40847062
Alignment:
| Q |
17 |
gaagaggaatagtgaaacgttattaatctcaaccgttggtattttacttaccacgtgtcctacatctgaacaaagaattgaaaactagaggaagtaagca |
116 |
Q |
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||||||||| ||||||| || |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
40847173 |
gaagaggaacggtgaaacattgttaatctcaatcgttgatattttactcgccatatgtcctacatctgaacaaagaattggaaactggaggaagtaagca |
40847074 |
T |
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| Q |
117 |
actggagcagat |
128 |
Q |
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|||||||||||| |
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| T |
40847073 |
actggagcagat |
40847062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 6625183 - 6625243
Alignment:
| Q |
68 |
cacgtgtcctacatctgaacaaagaattgaaaactagaggaagtaagcaactggagcagat |
128 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
6625183 |
cacgtgtcctacatctgaacaaagaattagaaactggaggaagtaagcaactggagtagat |
6625243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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