View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15742_high_7 (Length: 235)
Name: NF15742_high_7
Description: NF15742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15742_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 25306916 - 25306713
Alignment:
| Q |
15 |
aagtcattggtttcagaatttctaaatgctaaacagcccaacattcaagtaagttattttatatatattttttcaaggataagtgaaaatctataaacat |
114 |
Q |
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| T |
25306916 |
aagtcattggtttcagaatttctaaatgctaaacaacccaacattcaagtaagttatgttttattttttttttcaagaataagtgaaaatctataaacat |
25306817 |
T |
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| Q |
115 |
acttaggctccttgatgaaaatcaatcttaacagtggnnnnnnncaatggttcatttctcattactctctggcaggttttataacttttattgaaccact |
214 |
Q |
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| T |
25306816 |
acttaggctccttaatgaaaatcaatcttaacagtggtttttttcaatggttcatttctcatta--ctctggcaggttttataacttttattgaaccact |
25306719 |
T |
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| Q |
215 |
cttcaa |
220 |
Q |
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|||||| |
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| T |
25306718 |
cttcaa |
25306713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 25278841 - 25278746
Alignment:
| Q |
15 |
aagtcattggtttcagaatttctaaatgctaaacagcccaacattcaagtaagttattttatatatattttttcaaggataagtgaaaatctataaaca |
113 |
Q |
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| T |
25278841 |
aagtcattggtttcagaatttcaaaatgctaaaaagcccaacattcaagtaagttatgttttata---tttttcaagaataagtcaaaatctataaaca |
25278746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 25278200 - 25278105
Alignment:
| Q |
123 |
tccttgatgaaaatcaatcttaacagtggnnnnnnncaatggttcatttctcattactctctggcaggttttataacttttattgaaccactcttcaa |
220 |
Q |
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||||| ||||||||||||||||| |||| |||| |||| |||||||| ||||| | |||||||||||||||||||||||| |||||||| |
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| T |
25278200 |
tccttaatgaaaatcaatcttaagagtgctttttttcaatagttcctttctcatcactct--gaaaggttttataacttttattgaacccctcttcaa |
25278105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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