View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15742_low_10 (Length: 223)
Name: NF15742_low_10
Description: NF15742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15742_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 44587364 - 44587565
Alignment:
| Q |
10 |
catcatcattcattctactcgacaccgtttcactcatcaccaccaccgtcgcagtttcagtttcagtttcacatcgcgaatttaatttccaattttaccc |
109 |
Q |
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| T |
44587364 |
catcaccattcattctactcgacaccgtttcactcatcaccaccaccgtcgcagtttcagtttcagtttcacatcgcgaatttaatttccaattttaccc |
44587463 |
T |
|
| Q |
110 |
ttcacaatctctctccaatttccaattctcaccaattttcgtcgatcttcttcaagtggaaccctaaaattgattcaattagggttttcgtgtgatttgt |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44587464 |
ttcacaatctctctccaatctccaattctcaccaattttcgtcgatcttcttcaagtggaaccctaaaattgattcaattagggttttcgtgtgatttgt |
44587563 |
T |
|
| Q |
210 |
ga |
211 |
Q |
| |
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|| |
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| T |
44587564 |
ga |
44587565 |
T |
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