View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15742_low_2 (Length: 505)
Name: NF15742_low_2
Description: NF15742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15742_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 3131135 - 3130657
Alignment:
| Q |
16 |
caagaagacattgctttcagttgtaaaacttaactattactatgaagaaaatgagttttcatttgcacgcaagtgtatgctttccaaattccaagataga |
115 |
Q |
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| T |
3131135 |
caagaagacattgctttcagttgtaaaacttaactattactatgaagaaaatgatttttcatttgcacgcaagtgtatgctttccaaattccaagataga |
3131036 |
T |
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| Q |
116 |
tgtagattataaaagtctccgggtagagatgtatatgacaattgacaactaatgtagaaataaaatttatcttgtgatatctaaaaataaatccaaccaa |
215 |
Q |
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| T |
3131035 |
tgtagattataaaagtctccgggtagagatgtatatgacaattgacaactaatgtagaaataaaatttatcttgtgatatctaaaaataaatccaaccaa |
3130936 |
T |
|
| Q |
216 |
agggaggtaaaagttaatgcaaagaagttggatgaaaaattatgatccacagaaatctatttttcaaattttagttactagcgggttcatactaccaaac |
315 |
Q |
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| T |
3130935 |
agggaggtaaaagttaatgcaaagaagttggatgaaaaattatgatccacagaaatctatttttcaaattttagttactagcgggttcatactaccaaac |
3130836 |
T |
|
| Q |
316 |
atattcatgatgcaacaaaagaaatactgtcaagagaaataataacctcctcaagaactgctttaacttgaagaagcttttcagcatgctcaagatcttc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3130835 |
atattcatgatgcaacaaaagaaatactgtcaagagaaataataacctcctcaagaactgctttaacttgaagaagcttttcagcatgctcaagatcttc |
3130736 |
T |
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| Q |
416 |
agcttcattatcaccttctagatcttgtctaaataaacacagaaacataatccattcaaaactccagcttaacattcat |
494 |
Q |
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| T |
3130735 |
agcttcgttatcaccttctagatcttgtctaaataaacacagaaacataatccattcaaaactccagcttaacattcat |
3130657 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 1924197 - 1924135
Alignment:
| Q |
344 |
gtcaagagaaataataacctcctcaagaactgctttaacttgaagaagcttttcagcatgctc |
406 |
Q |
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|||||||||| ||| |||||| || ||||| |||||||||||| | ||||||||| ||||||| |
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| T |
1924197 |
gtcaagagaattaaaaacctcttcgagaacagctttaacttgacggagcttttcaccatgctc |
1924135 |
T |
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