View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15742_low_3 (Length: 433)
Name: NF15742_low_3
Description: NF15742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15742_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 4830845 - 4831255
Alignment:
| Q |
9 |
caccatcttcatcaacttggatgtggaaccctaaacaacaccaagaacaagaagatgaagattcatgggaggtaagggcttttgctgaagacacaaggaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4830845 |
caccatcttcatcaacttggatgtggaaccctaaacaacaccaagaacaagaagatgaagattcatgggaggtaagggcttttgctgaagacacaaggaa |
4830944 |
T |
|
| Q |
109 |
tattatgaacacaacatggccaccaaggtcctacacctgcaccttttgcagaagagagttccggtcagctcaagctcttggtggtcacatgaatgttcac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4830945 |
tattatgaacacaacatggccaccaaggtcctacacctgtaccttttgcagaagagagttccggtcagctcaagctcttggtggtcacatgaatgttcac |
4831044 |
T |
|
| Q |
209 |
cgccgcgaccgtgctcgtctccatcaaacccaaccaccgttaaattcatctcatccttcatcaccattcataaatattcctccacaagaccttgttgcta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4831045 |
cgccgcgaccgtgctcgtctccatcaaacccaaccaccgttaaattcttctcatccttcatcaccattcataaatattcctccacaagaccttgttgcta |
4831144 |
T |
|
| Q |
309 |
atgctggattgtgccttctttaccatttaccaaaccctaataataatgcttttgcttccttcaatagttctagtcctaatggagaatctccttctacttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4831145 |
atgctggattgtgccttctttaccatttaccaaaccctaataataatgcttttgcttccttcaatagttctagtcctaatggagaatctccttctacttt |
4831244 |
T |
|
| Q |
409 |
tctctcaatct |
419 |
Q |
| |
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| T |
4831245 |
tctctcaatct |
4831255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 34522611 - 34522667
Alignment:
| Q |
151 |
cttttgcagaagagagttccggtcagctcaagctcttggtggtcacatgaatgttca |
207 |
Q |
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|||||| | ||||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
34522611 |
cttttgtaaaagagagtttaggtctgctcaagctcttggtggtcacatgaatattca |
34522667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 31844623 - 31844539
Alignment:
| Q |
123 |
catggccaccaaggtcctacacctgcaccttttgcagaagagagttccggtcagctcaagctcttggtggtcacatgaatgttca |
207 |
Q |
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||||||||||||| || ||||| || | |||||| |||| |||||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
31844623 |
catggccaccaagatcatacacatgtagcttttgtagaaaagagtttaaatcagctcaagcacttggaggtcacatgaatgttca |
31844539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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