View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15742_low_6 (Length: 279)
Name: NF15742_low_6
Description: NF15742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15742_low_6 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 63275 - 63547
Alignment:
| Q |
9 |
agcagagacagagtcctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaatag |
108 |
Q |
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| T |
63275 |
agcagagacagagtcctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatag |
63374 |
T |
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| Q |
109 |
a-------gctatgttatg----------gggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtc |
191 |
Q |
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| T |
63375 |
atctatcagctatgttatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtc |
63474 |
T |
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| Q |
192 |
gtgttctttttctatcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaac |
264 |
Q |
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| T |
63475 |
gtgttctttttctatcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaac |
63547 |
T |
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Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 40909819 - 40909547
Alignment:
| Q |
9 |
agcagagacagagtcctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaatag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909819 |
agcagagacagagtcctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatag |
40909720 |
T |
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| Q |
109 |
a-------gctatgttatgg----------ggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtc |
191 |
Q |
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| T |
40909719 |
atctatcagctatgttatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtc |
40909620 |
T |
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| Q |
192 |
gtgttctttttctatcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaac |
264 |
Q |
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| T |
40909619 |
gtgttctttttctatcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaac |
40909547 |
T |
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