View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15743_high_12 (Length: 333)
Name: NF15743_high_12
Description: NF15743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15743_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 6315045 - 6315347
Alignment:
| Q |
1 |
tcatgtgcagagtttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagta |
100 |
Q |
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| T |
6315045 |
tcatgtgcagaatttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagta |
6315144 |
T |
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| Q |
101 |
agcagctttggaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttgg |
200 |
Q |
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| T |
6315145 |
agcagctttggaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttgg |
6315244 |
T |
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| Q |
201 |
agattaacacgaggcatatagtagatggaaaaaaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcaga |
300 |
Q |
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| T |
6315245 |
agattaacacgaggcatatagtagatggaaaagaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcaga |
6315344 |
T |
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| Q |
301 |
tgg |
303 |
Q |
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||| |
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| T |
6315345 |
tgg |
6315347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 6318189 - 6318236
Alignment:
| Q |
13 |
tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
60 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
6318189 |
tttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
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