View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15743_high_13 (Length: 329)
Name: NF15743_high_13
Description: NF15743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15743_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 30719743 - 30720031
Alignment:
| Q |
22 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatatcgagcctcagtgtt |
121 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||| |||| |||||||| |
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| T |
30719743 |
ggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtt |
30719842 |
T |
|
| Q |
122 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719843 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
30719942 |
T |
|
| Q |
222 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcccacaaa |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30719943 |
tccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
30720031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 310
Target Start/End: Complemental strand, 30881616 - 30881328
Alignment:
| Q |
22 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatatcgagcctcagtgtt |
121 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||| |||| |||||||| |
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| T |
30881616 |
ggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtt |
30881517 |
T |
|
| Q |
122 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881516 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
30881417 |
T |
|
| Q |
222 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcccacaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30881416 |
tccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
30881328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 68 - 310
Target Start/End: Complemental strand, 30892653 - 30892411
Alignment:
| Q |
68 |
atttgcactgcaagttccatcaacaccttgataaggatatcgagcctcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
167 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892653 |
atttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
30892554 |
T |
|
| Q |
168 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattcctt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30892553 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatggattcctt |
30892454 |
T |
|
| Q |
268 |
cggttgccgcaacagcagaaaatgcccaacaacatcccacaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30892453 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
30892411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 44731179 - 44731461
Alignment:
| Q |
22 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatatcgagcctcagtgtt |
121 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| ||| || ||||| | |
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|
| T |
44731179 |
ggacatcttcatacccggtaatggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtact |
44731278 |
T |
|
| Q |
122 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44731279 |
aagtccgtgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtcacaatcaacaagttcttgt |
44731378 |
T |
|
| Q |
222 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcc |
304 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
44731379 |
tccgataaagagaccaactttccagtactcaacttagtaattccttcggttgctgcaacagctgaaaatgcccaacaacatcc |
44731461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 16867566 - 16867854
Alignment:
| Q |
22 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatatcgagcctcagtgtt |
121 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| || || || || || |
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|
| T |
16867566 |
ggacatcttcatacccagtaatggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtatt |
16867665 |
T |
|
| Q |
122 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||| |
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|
| T |
16867666 |
tagtccatgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtcacagtcaacgagttcttgt |
16867765 |
T |
|
| Q |
222 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcccacaaa |
310 |
Q |
| |
|
|| |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
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|
| T |
16867766 |
tctgataaagagatcaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
16867854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 310
Target Start/End: Complemental strand, 8899229 - 8898943
Alignment:
| Q |
24 |
acatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatatcgagcctcagtgttga |
123 |
Q |
| |
|
||||| |||||||||||||| ||| ||| || |||||||||||||||||| | || |||||||||||||| ||||| || ||| |||| |||||||||| |
|
|
| T |
8899229 |
acatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttga |
8899130 |
T |
|
| Q |
124 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899129 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
8899030 |
T |
|
| Q |
224 |
cgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcccacaaa |
310 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
8899029 |
tgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
8898943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 76 - 310
Target Start/End: Complemental strand, 31727335 - 31727101
Alignment:
| Q |
76 |
tgcaagttccatcaacaccttgataaggatatcgagcctcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctc |
175 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||| |||||| | ||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31727335 |
tgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggatgatgaattcaaaagcatcatccataagaccaccctc |
31727236 |
T |
|
| Q |
176 |
acaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgcc |
275 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||||||||||||||||||| |
|
|
| T |
31727235 |
acaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaaatttcctgtggtcaacttatgaattccttcggttgat |
31727136 |
T |
|
| Q |
276 |
gcaacagcagaaaatgcccaacaacatcccacaaa |
310 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
31727135 |
gcaaccgcagaaaacgcccaacaacatcctacaaa |
31727101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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