View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15743_high_22 (Length: 308)

Name: NF15743_high_22
Description: NF15743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15743_high_22
NF15743_high_22
[»] chr5 (1 HSPs)
chr5 (21-308)||(39076154-39076433)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 39076154 - 39076433
Alignment:
Q  21 acatcatcaccatcattttcaatttcatcatttatctaagaccaattgcagccgcagnnnnnnnnnnnnnnnnngcatttatgaaaaagtaaaacaagtg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||    
T  39076154 acatcatcaccatcattttcaatttcatcatttatctaagaccaattgcagccgcagttttttttt--------gcatttatgaaaaagtaaaacaagtg 39076245  T
Q  121 caggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattgcttaactatataagtcttca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076246 caggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattgcttaactatataagtcttca 39076345  T
Q  221 ttcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaatacaaattagtgcaagtaaatgtttagacaatgcaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39076346 ttcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaaaacaaattagtgcaagtaaatgtttagacaatgcaa 39076433  T

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